Author

Afrah Shafquat

Observed names: A. Shafquat, Shafquat, Afrah

Observed institutions: Broad Institute, Harvard University, Cornell University, Dassault Systèmes (United States), Medidata (United States), Massachusetts Institute of Technology

ORCID: 0000-0002-2572-5521

Observed ORCID: 0000-0002-2572-5521

OpenAlex ID: A5001701887

Sequencing and beyond: integrating molecular 'omics' for microbial community profiling

2015 · Eric A. Franzosa, Tiffany Hsu, et al. · Nature Reviews Microbiology · 769

Functional and phylogenetic assembly of microbial communities in the human microbiome

2014 · Afrah Shafquat, Regina Joice, et al. · Trends in Microbiology · 224

Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment

2016 · Tiffany Hsu, Regina Joice, et al. · mSystems · 199

PDF

Determining Microbial Products and Identifying Molecular Targets in the Human Microbiome

2014 · Regina Joice, Koji Yasuda, et al. · Cell Metabolism · 105

PDF

Discovery of bioactive microbial gene products in inflammatory bowel disease

2022 · Yancong Zhang, Amrisha Bhosle, et al. · Nature · 103

XX Disorder of Sex Development is associated with an insertion on chromosome 9 and downregulation of RSPO1 in dogs (Canis lupus familiaris)

2017 · Vicki N. Meyers-Wallen, Adam R. Boyko, et al. · PLoS ONE · 19

PDF

A reproducible approach to high-throughput biological data acquisition and integration

2015 · Daniela Börnigen, Yo Sup Moon, et al. · PeerJ · 15

Role of KRAS in regulating normal human airway basal cell differentiation

2019 · Fumihiro Ogawa, Matthew S. Walters, et al. · Respiratory Research · 14

PDF

Association Between State Medicaid Policies and Accrual of Black or Hispanic Patients to Cancer Clinical Trials

2024 · William L. Schpero, Samuel U. Takvorian, et al. · Journal of Clinical Oncology · 8

PDF

Simulants: Synthetic Clinical Trial Data via Subject-Level Privacy-Preserving Synthesis.

2022 · Mandis Beigi, Afrah Shafquat, et al. · PubMed Central · 8

PDF

Identifying novel associations in GWAS by hierarchical Bayesian latent variable detection of differentially misclassified phenotypes

2020 · Afrah Shafquat, Ronald G. Crystal, et al. · BMC Bioinformatics · 8

PDF

SynRL: Aligning Synthetic Clinical Trial Data with Human-preferred Clinical Endpoints Using Reinforcement Learning

2024 · Das, Trisha, Wang, Zifeng, et al. · arXiv (Cornell University) · 3

PDF

Using Synthetic Data Produced By Artificial Intelligence (AI) to Generate Insights for Chimeric Antigen Receptor T-Cell (CAR T-Cell) Clinical Trials

2024 · Penelope Lafeuille, Afrah Shafquat, et al. · Blood · 3

PDF

Brain metastases in clinical trial participants with KRAS-mutated advanced non-small cell lung cancer receiving docetaxel: Pooled data analysis

2024 · Jacob Aptekar, Rahul Jain, et al. · Lung Cancer · 3

SECRET: Semi-supervised Clinical Trial Document Similarity Search

2025 · Trisha Das, Afrah Shafquat, et al. · Proceedings of the conference - Association for Computational Linguistics. Meeting · 2

PDF

TrialSynth: Generation of Synthetic Sequential Clinical Trial Data

2024 · Gao, Chufan, Beigi, Mandis, et al. · arXiv (Cornell University) · 1

PDF

The Last Mile of Coding Agents for Long-Document Tasks: An Empirical Study on Clinical Trial Protocol Digitization

2026 · Lin, Jiacheng, Low, Geoffrey, et al. · arXiv (Cornell University)

PDF

SeqTrial: Utility Preserving Sequential Clinical Trial Data Generator.

2024 · Trisha Das, Afrah Shafquat, et al. · PubMed

Association between state Medicaid policies and accrual of Black and Hispanic patients to cancer clinical trials.

2023 · Samuel U Takvorian, William L Schpero, et al. · Journal of Clinical Oncology

PP01.78 Brain Metastasis in Patients With KRAS Mutant Advanced NSCLC Receiving Docetaxel: Pooled Clinical Trial Data Analysis

2023 · J. Aptekar, R. Jain, et al. · Journal of Thoracic Oncology

PDF

Additional file 2 of Identifying novel associations in GWAS by hierarchical Bayesian latent variable detection of differentially misclassified phenotypes

2020 · Afrah Shafquat, Crystal, Ronald G., et al. · Figshare

Works count: 28

Citation count: 1,484

H-index: 8

I10-index: 8