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Erik Poppleton

Root litter decomposition slows with soil depth
2018 · Caitlin E. Hicks Pries, Benjamin N. Sulman, et al. · Soil Biology and Biochemistry · 219
Design, optimization and analysis of large DNA and RNA nanostructures through interactive visualization, editing and molecular simulation
2020 · Erik Poppleton, Joakim Bohlin, et al. · Nucleic Acids Research · 182
Meta-DNA structures
2020 · Guangbao Yao, Fei Zhang, et al. · Nature Chemistry · 177
Design and simulation of DNA, RNA and hybrid protein–nucleic acid nanostructures with oxView
2022 · Joakim Bohlin, Michael Matthies, et al. · Nature Protocols · 125
OxDNA.org: a public webserver for coarse-grained simulations of DNA and RNA nanostructures
2021 · Erik Poppleton, Roger Romero, et al. · Nucleic Acids Research · 121
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TacoxDNA: A user‐friendly web server for simulations of complex DNA structures, from single strands to origami
2019 · Antonio Suma, Erik Poppleton, et al. · Journal of Computational Chemistry · 108
oxDNA: coarse-grained simulations of nucleic acids made simple
2023 · Erik Poppleton, Michael Matthies, et al. · The Journal of Open Source Software · 56
Genetic encoding and expression of RNA origami cytoskeletons in synthetic cells
2025 · Mai P. Tran, Taniya Chakraborty, et al. · Nature Nanotechnology · 51
A rhythmically pulsing leaf-spring DNA-origami nanoengine that drives a passive follower
2023 · Mathias Centola, Erik Poppleton, et al. · Nature Nanotechnology · 41
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A roadmap toward the synthesis of life
2025 · Christine M.E. Kriebisch, Olga Bantysh, et al. · Chem · 37
RNA origami: design, simulation and application
2023 · Erik Poppleton, Niklas Urbanek, et al. · RNA Biology · 35
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Nanobase.org: a repository for DNA and RNA nanostructures
2021 · Erik Poppleton, Aatmik Mallya, et al. · Nucleic Acids Research · 34
Coarse-grained nucleic acid–protein model for hybrid nanotechnology
2020 · Jonah Procyk, Erik Poppleton, et al. · Soft Matter · 34
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The oxDNA Coarse-Grained Model as a Tool to Simulate DNA Origami
2023 · Jonathan P. K. Doye, Hannah Fowler, et al. · Methods in molecular biology · 31
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Triangulated Wireframe Structures Assembled Using Single-Stranded DNA Tiles
2019 · Michael Matthies, Nayan P. Agarwal, et al. · ACS Nano · 24
Effects of flexibility of the α2 chain of type I collagen on collagenase cleavage
2018 · Arya Mekkat, Erik Poppleton, et al. · Journal of Structural Biology · 20
Enzymatic Phosphorylation of Ser in a Type I Collagen Peptide
2018 · Yimin Qiu, Erik Poppleton, et al. · Biophysical Journal · 19
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DNA-Nanostructure-Guided Assembly of Proteins into Programmable Shapes
2024 · Qinyi Lu, Yang Xu, et al. · Nano Letters · 17
Coarse-Grained Simulations for the Characterization and Optimization of Hybrid Protein–DNA Nanostructures
2022 · Raghu Pradeep Narayanan, Jonah Procyk, et al. · ACS Nano · 12
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ExpertRNA: A New Framework for RNA Secondary Structure Prediction
2022 · Menghan Liu, Erik Poppleton, et al. · INFORMS journal on computing · 8
ANNaMo: Coarse-grained modeling for folding and assembly of RNA and DNA systems
2024 · F. Tosti Guerra, E. Poppleton, et al. · The Journal of Chemical Physics · 7
Unified Nanotechnology Format: One Way to Store Them All
2021 · David Kuťák, Erik Poppleton, et al. · Molecules · 7
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PyFuRNAce: an integrated design engine for RNA origami
2025 · L. Monari, I. Braun, et al. · Nature Communications · 6
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Author Correction: Meta-DNA structures
2020 · Guangbao Yao, Fei Zhang, et al. · Nature Chemistry · 4
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IgG-inspired, multivalent protein-DNA nanostructures for high-affinity, tunable, and reversible binding to biomolecular targets
2023 · Rong Zheng, Yang Xu, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 3
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Works count: 34
Citation count: 1,378
H-index: 17
I10-index: 19
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