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David A. Sivak

Observed names: David A Sivak, David Sivak, David A. Sivak, Sivak, David, Sivak, David A, Sivak, David A.
ORCID: 0000-0003-4815-4722
Observed ORCID: 0000-0003-4815-4722
OpenAlex ID: A5005809960
Thermodynamic Metrics and Optimal Paths
2012 · David A. Sivak, Gavin E. Crooks · Physical Review Letters · 356
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Thermodynamics of Prediction
2012 · Susanne Still, David A. Sivak, et al. · Physical Review Letters · 254
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Crystal Cryocooling Distorts Conformational Heterogeneity in a Model Michaelis Complex of DHFR
2014 · Daniel A. Keedy, Henry van den Bedem, et al. · Structure · 148
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Geometry of thermodynamic control
2012 · Patrick R. Zulkowski, David A. Sivak, et al. · Physical Review E · 139
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Controlling DNA Capture and Propagation through Artificial Nanopores
2007 · Eliane H. Trepagnier, Aleksandra Radenovic, et al. · Nano Letters · 135
A symbiotic physical niche in Drosophila melanogaster regulates stable association of a multi-species gut microbiota
2023 · Ren Dodge, Eric W. Jones, et al. · Nature Communications · 94
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Stochastic microbiome assembly depends on context
2022 · Eric W. Jones, Jean M. Carlson, et al. · Proceedings of the National Academy of Sciences · 90
Transcription Factor Competition Allows Embryonic Stem Cells to Distinguish Authentic Signals from Noise
2015 · Cameron Sokolik, Yanxia Liu, et al. · Cell Systems · 81
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Probing the Conformational Distributions of Subpersistence Length DNA
2009 · Alexander J. Mastroianni, David A. Sivak, et al. · Biophysical Journal · 80
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Time Step Rescaling Recovers Continuous-Time Dynamical Properties for Discrete-Time Langevin Integration of Nonequilibrium Systems
2014 · David A. Sivak, John D. Chodera, et al. · The Journal of Physical Chemistry B · 68
Maximizing power and velocity of an information engine
2021 · Tushar K. Saha, Joseph N. E. Lucero, et al. · Proceedings of the National Academy of Sciences · 65
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Optimal control in stochastic thermodynamics
2023 · Steven Blaber, David A Sivak · Journal of Physics Communications · 62
Using Nonequilibrium Fluctuation Theorems to Understand and Correct Errors in Equilibrium and Nonequilibrium Simulations of Discrete Langevin Dynamics
2013 · David A. Sivak, John D. Chodera, et al. · Physical Review X · 61
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Thermodynamic geometry of minimum-dissipation driven barrier crossing
2016 · David A. Sivak, Gavin E. Crooks · Physical review. E · 59
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E pluribus unum, no more: from one crystal, many conformations
2014 · Rahel A Woldeyes, David A Sivak, et al. · Current Opinion in Structural Biology · 57
Near-Equilibrium Measurements of Nonequilibrium Free Energy
2012 · David A. Sivak, Gavin E. Crooks · Physical Review Letters · 54
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Using a system’s equilibrium behavior to reduce its energy dissipation in nonequilibrium processes
2019 · Sara Tafoya, Steven J. Large, et al. · Proceedings of the National Academy of Sciences · 52
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Quantifying Configuration-Sampling Error in Langevin Simulations of Complex Molecular Systems
2018 · Josh Fass, David A. Sivak, et al. · Entropy · 46
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Allocating dissipation across a molecular machine cycle to maximize flux
2017 · Aidan I. Brown, David A. Sivak · Proceedings of the National Academy of Sciences · 46
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Optimal Control of Transitions between Nonequilibrium Steady States
2013 · Patrick R. Zulkowski, David A. Sivak, et al. · PLoS ONE · 43
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Steps minimize dissipation in rapidly driven stochastic systems
2021 · Steven Blaber, Miranda D. Louwerse, et al. · Physical review. E · 38
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Information Engine in a Nonequilibrium Bath
2023 · Tushar K. Saha, Jannik Ehrich, et al. · Physical Review Letters · 34
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Energy and information flows in autonomous systems
2023 · Jannik Ehrich, David A. Sivak · Frontiers in Physics · 34
Optimal discrete control: minimizing dissipation in discretely driven nonequilibrium systems
2019 · Steven J Large, David A Sivak · Journal of Statistical Mechanics Theory and Experiment · 29
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Environmental Statistics and Optimal Regulation
2014 · David A. Sivak, Matt Thomson · PLoS Computational Biology · 29
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Works count: 112
Citation count: 2,748
H-index: 27
I10-index: 52
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