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Julia Koehler Leman

Observed names: Julia Koehler Leman,, Koehler Leman, Julia, Leman, Julia Koehler
Observed institutions: Johns Hopkins University, Vanderbilt University, Simons Foundation, Flatiron Institute, Open Molecular Software Foundation, New York University
ORCID: 0000-0002-5693-3593
Observed ORCID: 0000-0002-5693-3593
OpenAlex ID: A5006314973
Structure-based protein function prediction using graph convolutional networks
2021 · Vladimir Gligorijević, P. Douglas Renfrew, et al. · Nature Communications · 961
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Macromolecular modeling and design in Rosetta: recent methods and frameworks
2020 · Julia Koehler Leman, Brian D. Weitzner, et al. · Nature Methods · 881
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An Integrated Framework Advancing Membrane Protein Modeling and Design
2015 · Rebecca F. Alford, Julia Koehler Leman, et al. · PLoS Computational Biology · 154
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Protein remote homology detection and structural alignment using deep learning
2023 · Tymor Hamamsy, James T. Morton, et al. · Nature Biotechnology · 150
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Sequence-structure-function relationships in the microbial protein universe
2023 · Julia Koehler Leman, Pawel Szczerbiak, et al. · Nature Communications · 105
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Computational modeling of membrane proteins
2014 · Julia Koehler Leman, Martin B. Ulmschneider, et al. · Proteins Structure Function and Bioinformatics · 104
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework
2017 · Gustavo Glusman, Peter W. Rose, et al. · Genome Medicine · 61
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Simultaneous prediction of protein secondary structure and transmembrane spans
2013 · Julia Koehler Leman,, Ralf Mueller, et al. · Proteins Structure Function and Bioinformatics · 58
Specificity and Speed: Tethered Photopharmacology
2017 · Philipp Leippe, Julia Koehler Leman, et al. · Biochemistry · 48
Better together: Elements of successful scientific software development in a distributed collaborative community
2020 · Julia Koehler Leman, Brian D. Weitzner, et al. · PLoS Computational Biology · 45
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Recent Advances in NMR Protein Structure Prediction with ROSETTA
2023 · Julia Koehler Leman, Georg Künze · International Journal of Molecular Sciences · 38
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Computational Prediction of the Heterodimeric and Higher-Order Structure of gpE1/gpE2 Envelope Glycoproteins Encoded by Hepatitis C Virus
2017 · Holly Freedman, Michael R. Logan, et al. · Journal of Virology · 38
Expanding the toolkit for membrane protein modeling in Rosetta
2016 · Julia Koehler Leman, Benjamin K Mueller, et al. · Bioinformatics · 38
Integrative Protein Modeling in RosettaNMR from Sparse Paramagnetic Restraints
2019 · Georg Kuenze, Richard Bonneau, et al. · Structure · 33
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Capturing Conformational States in Proteins Using Sparse Paramagnetic NMR Data
2015 · Kala Bharath Pilla, Julia Koehler Leman, et al. · PLoS ONE · 30
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Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks
2021 · Julia Koehler Leman, Sergey Lyskov, et al. · Nature Communications · 25
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Computing structure-based lipid accessibility of membrane proteins with mp_lipid_acc in RosettaMP
2017 · Julia Koehler Leman, Sergey Lyskov, et al. · BMC Bioinformatics · 25
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Classification of the Molecular Defects Associated with Pathogenic Variants of the SLC6A8 Creatine Transporter
2020 · Martin D. Salazar, Nathan B. Zelt, et al. · Biochemistry · 24
Improving Loop Modeling of the Antibody Complementarity-Determining Region 3 Using Knowledge-Based Restraints
2016 · Jessica A. Finn, Julia Koehler Leman, et al. · PLoS ONE · 23
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Combining Evolutionary Information and an Iterative Sampling Strategy for Accurate Protein Structure Prediction
2015 · Tatjana Braun, Julia Koehler Leman, et al. · PLoS Computational Biology · 21
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TM-Vec: template modeling vectors for fast homology detection and alignment
2022 · Tymor Hamamsy, James T. Morton, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 16
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Statistically derived asymmetric membrane potentials from α-helical and β-barrel membrane proteins
2018 · Julia Koehler Leman, Richard Bonneau, et al. · Scientific Reports · 12
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Comparison of NMR and crystal structures of membrane proteins and computational refinement to improve model quality
2017 · Julia Koehler Leman, Andrew R. D'Avino, et al. · Proteins Structure Function and Bioinformatics · 12
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Large protein databases reveal structural complementarity and functional locality
2025 · Paweł Szczerbiak, Lukasz M. Szydlowski, et al. · Nature Communications · 9
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Modeling membrane geometries implicitly in Rosetta
2024 · Hope Woods, Julia Koehler Leman, et al. · Protein Science · 9
Works count: 43
Citation count: 2,953
H-index: 20
I10-index: 23
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