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Bastian Pfeifer

Observed names: Pfeifer Bastian, Pfeifer, Bastian
ORCID: 0000-0001-7035-9535
Observed ORCID: 0000-0001-7035-9535
OpenAlex ID: A5008738759
PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R
2014 · Bastian Pfeifer, Ulrich Wittelsbürger, et al. · Molecular Biology and Evolution · 938
Towards multi-modal causability with Graph Neural Networks enabling information fusion for explainable AI
2021 · Andreas Holzinger, Bernd Malle, et al. · Information Fusion · 365
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GNN-SubNet: disease subnetwork detection with explainable graph neural networks
2022 · Bastian Pfeifer, Afan Secic, et al. · Bioinformatics · 86
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CLARUS: An interactive explainable AI platform for manual counterfactuals in graph neural networks
2024 · Jacqueline Michelle Metsch, Anna Saranti, et al. · Journal of Biomedical Informatics · 64
Robust Random Forest-Based All-Relevant Feature Ranks for Trustworthy AI
2022 · Bastian Pfeifer, Andreas Holzinger, et al. · Studies in health technology and informatics · 42
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Multi-omics disease module detection with an explainable Greedy Decision Forest
2022 · Bastian Pfeifer, Hubert Baniecki, et al. · Scientific Reports · 41
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Ensemble-GNN: federated ensemble learning with graph neural networks for disease module discovery and classification
2023 · Bastian Pfeifer, Hryhorii Chereda, et al. · Bioinformatics · 35
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Estimates of introgression as a function of pairwise distances
2019 · Bastian Pfeifer, Durrell D Kapan · BMC Bioinformatics · 35
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A hierarchical clustering and data fusion approach for disease subtype discovery
2020 · Bastian Pfeifer, Michael G. Schimek · Journal of Biomedical Informatics · 31
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Human-in-the-Loop Integration with Domain-Knowledge Graphs for Explainable Federated Deep Learning
2023 · Andreas Holzinger, Anna Saranti, et al. · Lecture notes in computer science · 30
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Tree smoothing: Post-hoc regularization of tree ensembles for interpretable machine learning
2024 · Bastian Pfeifer, Arne Gevaert, et al. · Information Sciences · 27
Explaining and visualizing black-box models through counterfactual paths
2025 · Bastian Pfeifer, Mateusz Krzyzinski, et al. · Pattern Analysis and Applications · 26
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Actionable Explainable AI (AxAI): A Practical Example with Aggregation Functions for Adaptive Classification and Textual Explanations for Interpretable Machine Learning
2022 · Anna Saranti, Miroslav Hudec, et al. · Machine Learning and Knowledge Extraction · 26
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From 3D point‐cloud data to explainable geometric deep learning: State‐of‐the‐art and future challenges
2024 · Anna Saranti, Bastian Pfeifer, et al. · Wiley Interdisciplinary Reviews Data Mining and Knowledge Discovery · 25
Collaborative weighting in federated graph neural networks for disease classification with the human-in-the-loop
2024 · Christian Hausleitner, Heimo Mueller, et al. · Scientific Reports · 21
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Parea: Multi-view ensemble clustering for cancer subtype discovery
2023 · Bastian Pfeifer, Marcus D. Bloice, et al. · Journal of Biomedical Informatics · 18
Genome scans for selection and introgression based on k ‐nearest neighbour techniques
2020 · Bastian Pfeifer, Nikolaos Alachiotis, et al. · Molecular Ecology Resources · 18
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Generating Explanations for Conceptual Validation of Graph Neural Networks: An Investigation of Symbolic Predicates Learned on Relevance-Ranked Sub-Graphs
2022 · Bettina Finzel, Anna Saranti, et al. · Künstliche Intell. · 13
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Federated unsupervised random forest for privacy-preserving patient stratification
2024 · Bastian Pfeifer, Christel Sirocchi, et al. · Bioinformatics · 12
Feature graphs for interpretable unsupervised tree ensembles: centrality, interaction, and application in disease subtyping
2025 · Christel Sirocchi, Martin Urschler, et al. · BioData Mining · 8
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EHR problem list clustering for improved topic-space navigation
2019 · Markus Kreuzthaler, Bastian Pfeifer, et al. · BMC Medical Informatics and Decision Making · 8
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Embedding-based terminology expansion via secondary use of large clinical real-world datasets
2023 · Amila Kugic, Bastian Pfeifer, et al. · Journal of Biomedical Informatics · 7
Calibrated kNN classification via second-layer neighborhood analysis
2025 · Bastian Pfeifer, Markus Kreuzthaler · Advances in Data Analysis and Classification · 4
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Be Careful When Evaluating Explanations Regarding Ground Truth
2023 · Baniecki, Hubert, Chrabaszcz, Maciej, et al. · arXiv (Cornell University) · 4
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WhopGenome: high-speed access to whole-genome variation and sequence data in R
2014 · Ulrich Wittelsbürger, Bastian Pfeifer, et al. · Bioinformatics · 4
Works count: 58
Citation count: 1,912
H-index: 17
I10-index: 19
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