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Berna Doğan

Observed names: Berna Dogan, Dogan, Berna
ORCID: 0000-0002-5650-5177
Observed ORCID: 0000-0002-5650-5177
OpenAlex ID: A5009357817
Synthesis, biological activity and multiscale molecular modeling studies of bis-coumarins as selective carbonic anhydrase IX and XII inhibitors with effective cytotoxicity against hepatocellular carcinoma
2019 · Belma Zengin Kurt, Aydan Dag, et al. · Bioorganic Chemistry · 68
Near-physiological-temperature serial crystallography reveals conformations of SARS-CoV-2 main protease active site for improved drug repurposing
2021 · Serdar Durdagi, Çağdaş Dağ, et al. · Structure · 40
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Synthesis, molecular docking and molecular dynamics studies of novel tacrine-carbamate derivatives as potent cholinesterase inhibitors
2021 · Ozge Ozten, Belma Zengin Kurt, et al. · Bioorganic Chemistry · 38
Integrating Ligand and Target-Driven Based Virtual Screening Approaches With in vitro Human Cell Line Models and Time-Resolved Fluorescence Resonance Energy Transfer Assay to Identify Novel Hit Compounds Against BCL-2
2020 · Gurbet Tutumlu, Berna Dogan, et al. · Frontiers in Chemistry · 34
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Formation of the inclusion complex of water soluble fluorescent calix[4]arene and naringenin: solubility, cytotoxic effect and molecular modeling studies
2019 · Mehmet Oguz, Asif Ali Bhatti, et al. · Journal of Biomolecular Structure and Dynamics · 24
Screening of Clinically Approved and Investigation Drugs as Potential Inhibitors of SARS-CoV-2 Main Protease and Spike Receptor-Binding Domain Bound with ACE2 COVID19 Target Proteins: A Virtual Drug Repurposing Study
2020 · Serdar Durdagi, Busecan Aksoydan, et al. · ChemRxiv · 22
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A novel BH3 mimetic Bcl-2 inhibitor promotes autophagic cell death and reduces in vivo Glioblastoma tumor growth
2022 · Seyma Calis, Berna Dogan, et al. · Cell Death Discovery · 21
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An Integrated in silico Approach and in vitro Study for the Discovery of Small‐Molecule USP7 Inhibitors as Potential Cancer Therapies
2020 · Duaa Kanan, Tarek Kanan, et al. · ChemMedChem · 21
Design and synthesis of novel caffeic acid phenethyl ester (CAPE) derivatives and their biological activity studies in glioblastoma multiforme (GBM) cancer cell lines
2022 · Bilgesu Onur Sucu, Elif Beyza Koc, et al. · Journal of Molecular Graphics and Modelling · 20
Free radical polymerization of ethyl methacrylate and ethyl α-hydroxy methacrylate: A computational approach to the propagation kinetics
2012 · Berna Dogan, Saron Catak, et al. · Polymer · 20
Screening of Clinically Approved and Investigation Drugs as Potential Inhibitors of COVID-19 Main Protease: A Virtual Drug Repurposing Study
2020 · Serdar Durdagi, Busecan Aksoydan, et al. · ChemRxiv · 17
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Current status of multiscale simulations on GPCRs
2019 · Serdar Durdagi, Berna Dogan, et al. · Current Opinion in Structural Biology · 16
Prediction of HIV-1 protease resistance using genotypic, phenotypic, and molecular information with artificial neural networks
2023 · Huseyin Tunc, Berna Dogan, et al. · PeerJ · 15
Investigation of supramolecular interaction of quercetin with N , N -dimethylamine-functionalized p -sulfonated calix[4,8]arenes using molecular modeling and their in vitro cytotoxic response towards selected cancer cells
2021 · Mehmet Oguz, Berna Dogan, et al. · New Journal of Chemistry · 11
Drug Re‐positioning Studies for Novel HIV‐1 Inhibitors Using Binary QSAR Models and Multi‐target‐driven In Silico Studies
2020 · Berna Dogan, Serdar Durdagi · Molecular Informatics · 10
In silico dissolution rates of pharmaceutical ingredients
2016 · Berna Dogan, Julian Schneider, et al. · Chemical Physics Letters · 9
Structural and Functional Characterization of Allatostatin Receptor Type-C of Thaumetopoea pityocampa , a Potential Target for Next-Generation Pest Control Agents
2021 · Aida Shahraki, Ali Işbilir, et al. · Journal of Chemical Information and Modeling · 7
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Machine Learning Approaches to Predict the Selectivity of Compounds against HDAC1 and HDAC6
2024 · Berna Dogan · Journal of Computational Biophysics and Chemistry · 5
Screening of Clinically Approved and Investigation Drugs as Potential Inhibitors of SARS-CoV-2 Main Protease and Spike Receptor-Binding Domain Bound with ACE2 COVID19 Target Proteins: A Virtual Drug Repurposing Study
2020 · Serdar Durdagi, Busecan Aksoydan, et al. · ChemRxiv · 4
Targeting Ubiquitin-Specific Protease 7 (USP7): A Pharmacophore-Guided Drug Repurposing and Physics-Based Molecular Simulation Study
2025 · Duaa Kanan, Tarek Kanan, et al. · ACS Omega · 3
Investigating the Effect of GLU283 Protonation State on the Conformational Heterogeneity of CCR5 by Molecular Dynamics Simulations
2024 · Berna Dogan, Serdar Durdağı · Journal of Chemical Information and Modeling · 3
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Advancing Accurate Quantification of Protein‐Ligand Interactions: Differential Scanning Calorimetry as a Precision Screening Tool Using BCL‐2 as a Model System
2026 · Bircan Dinc, Berna Dogan, et al. · ChemMedChem · 2
Differential Scanning Calorimetry: a Suitable Methodology to Problem the Binding Properties of Bcl-2 Inhibitors
2023 · Bircan Dinc, Berna Dogan, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2
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Machine learning approaches to quantitively predict selectivity of compounds against hDAC1 and hDAC6 isoforms
2022 · Berna Dogan · bioRxiv (Cold Spring Harbor Laboratory) · 2
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All Atom Molecular Dynamics Simulations of inhibitor N3 at the binding pocket of SARS-CoV2 Main Protease (PDB ID: 6LU7)
2020 · Durdagi, Serdar, Aksoydan, Busecan, et al. · Figshare · 2
Works count: 36
Citation count: 419
H-index: 13
I10-index: 15
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