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Eef M. Jonkheer

Observed names: Eef Jonkheer, Eef M Jonkheer, Jonkheer, Eef, Jonkheer, Eef M.
Observed institution: Wageningen University & Research
ORCID: 0000-0002-2608-6311
Observed ORCID: 0000-0002-2608-6311
OpenAlex ID: A5010356022
A footprint of desiccation tolerance in the genome of Xerophyta viscosa
2017 · Maria-Cecília D. Costa, Mariana A. S. Artur, et al. · Nature Plants · 135
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PanTools v3: functional annotation, classification and phylogenomics
2022 · Eef M Jonkheer, Dirk-Jan M van Workum, et al. · Bioinformatics · 53
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The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool
2021 · Eef M. Jonkheer, Balázs Brankovics, et al. · BMC Genomics · 51
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PanVA: Pangenomic Variant Analysis
2023 · Astrid van den Brandt, Eef M. Jonkheer, et al. · IEEE Transactions on Visualization and Computer Graphics · 11
Exploring intra‐ and intergenomic variation in haplotype‐resolved pangenomes
2025 · Eef M. Jonkheer, Dick de Ridder, et al. · Plant Biotechnology Journal · 5
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An Efficient Triplex TaqMan Quantitative PCR to Detect a Blackleg-Causing Lineage of Pectobacterium brasiliense in Potato Based on a Pangenome Analysis
2023 · Theo A. J. van der Lee, Marga P. E. van Gent-Pelzer, et al. · Microorganisms · 3
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Pangenomics to understand prophage dynamics in the Pectobacterium genus and the radiating lineages of Pectobacterium brasiliense
2025 · Lakhansing A. Pardeshi, Inge van Duivenbode, et al. · Microbial Genomics · 2
A blueprint of seed desiccation sensitivity in the genome of Castanospermum australe
2019 · Alexandre Marques, Maria-Cecília D. Costa, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2
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Beyond the reference: pangenomic applications for plants and pathogens
2024 · Eef M. Jonkheer
Data underlying the publication: "The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool"
2021 · Jonkheer, Eef, Smit, Sandra, et al. · Socio-Environmental Systems Modeling
Additional file 1 of The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool
2021 · Jonkheer, Eef M., Brankovics, Balázs, et al. · Figshare
Pangenome analysis and its application on Pectobacterium
2018 · Eef Jonkheer, Sandra Smit, et al. · Socio-Environmental Systems Modeling
Works count: 21
Citation count: 262
H-index: 5
I10-index: 4
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