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Kelsey N. Thompson

Observed names: Kelsey N Thompson, Kelsey Thompson, Thompson, Kelsey N.
ORCID: 0000-0002-9437-9722
Observed ORCIDs: 0000-0002-9437-9722, 0000-0002-9074-9116
OpenAlex ID: A5011222294
Multivariable association discovery in population-scale meta-omics studies
2021 · Himel Mallick, Ali Rahnavard, et al. · PLoS Computational Biology · 2,739
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
2023 · Aitor Blanco-Míguez, Francesco Beghini, et al. · Nature Biotechnology · 1,619
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MaAsLin 3: refining and extending generalized multivariable linear models for meta-omic association discovery
2026 · William A. Nickols, Thomas Kuntz, et al. · Nature Methods · 226
Pooled analysis of 3,741 stool metagenomes from 18 cohorts for cross-stage and strain-level reproducible microbial biomarkers of colorectal cancer
2025 · Gianmarco Piccinno, Kelsey N. Thompson, et al. · Nature Medicine · 161
Metatranscriptomics for the Human Microbiome and Microbial Community Functional Profiling
2021 · Yancong Zhang, Kelsey N. Thompson, et al. · Annual Review of Biomedical Data Science · 157
Whole microbial community viability is not quantitatively reflected by propidium monoazide sequencing approach
2021 · Ya Wang, Yan Yan, et al. · Microbiome · 108
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Discovery of bioactive microbial gene products in inflammatory bowel disease
2022 · Yancong Zhang, Amrisha Bhosle, et al. · Nature · 104
A framework for microbiome science in public health
2021 · Jeremy E. Wilkinson, Eric A. Franzosa, et al. · Nature Medicine · 93
Coffee consumption is associated with intestinal Lawsonibacter asaccharolyticus abundance and prevalence across multiple cohorts
2024 · Paolo Manghi, Amrisha Bhosle, et al. · Nature Microbiology · 89
RNA-based amplicon sequencing is ineffective in measuring metabolic activity in environmental microbial communities
2023 · Ya Wang, Kelsey N. Thompson, et al. · Microbiome · 83
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Statistical approaches for differential expression analysis in metatranscriptomics
2021 · Yancong Zhang, Kelsey N Thompson, et al. · Bioinformatics · 77
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Alterations in the gut microbiome implicate key taxa and metabolic pathways across inflammatory arthritis phenotypes
2023 · Kelsey N. Thompson, Kevin S. Bonham, et al. · Science Translational Medicine · 59
The colorectal cancer-associated faecal microbiome of developing countries resembles that of developed countries
2021 · Caroline Young, Henry M. Wood, et al. · Genome Medicine · 55
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Microbiome Analysis of More Than 2,000 NHS Bowel Cancer Screening Programme Samples Shows the Potential to Improve Screening Accuracy
2021 · Caroline Young, Henry M. Wood, et al. · Clinical Cancer Research · 46
Multi-omic analysis reveals transkingdom gut dysbiosis in metabolic dysfunction-associated steatotic liver disease
2025 · Hanseul Kim, Paul Nelson, et al. · Nature Metabolism · 40
Metagenomic assessment of gut microbial communities and risk of severe COVID-19
2023 · Long H. Nguyen, Daniel Okin, et al. · Genome Medicine · 34
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Effects of Lifetime Exposures to Environmental Contaminants on the Adult Gut Microbiome
2022 · Kelsey N. Thompson, Youssef Oulhote, et al. · Environmental Science & Technology · 34
Comprehensive profile of the companion animal gut microbiome integrating reference-based and reference-free methods
2024 · Tobyn Branck, Zhiji Hu, et al. · The ISME Journal · 32
Carrageenan and insulin resistance in humans: a randomised double-blind cross-over trial
2024 · Robert Wagner, Janine Buettner, et al. · BMC Medicine · 28
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Use of nest bundles to monitor agrochemical exposure and effects among cavity nesting pollinators
2021 · Eric M. Peterson, Kelsey N. Thompson, et al. · Environmental Pollution · 28
The Sulfur Microbial Diet and Risk of Colorectal Cancer by Molecular Subtypes and Intratumoral Microbial Species in Adult Men
2021 · Daniel R. Sikavi, Long H. Nguyen, et al. · Clinical and Translational Gastroenterology · 19
Trophic-Level Interactive Effects of Phosphorus Availability on the Toxicities of Cadmium, Arsenic, and Their Binary Mixture in Media-Exposed Scenedesmus acutus and Media and Dietary-Exposed Daphnia pulex
2020 · Olushola M. Awoyemi, Seenivasan Subbiah, et al. · Environmental Science & Technology · 19
Quantifying Metagenomic Strain Associations from Microbiomes with Anpan
2025 · Andrew R. Ghazi, Kelsey N. Thompson, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 11
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Nitrate-N-mediated toxicological responses of Scenedesmus acutus and Daphnia pulex to cadmium, arsenic and their binary mixture (Cd/Asmix) at environmentally relevant concentrations
2020 · Olushola M. Awoyemi, Seenivasan Subbiah, et al. · Journal of Hazardous Materials · 9
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Enhanced multi-omic viral profiling from microbial community sequencing with BAQLaVa
2026 · Jordan S. L. Jensen, Sagun Maharjan, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 4
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Works count: 80
Citation count: 5,897
H-index: 20
I10-index: 23
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