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Cécile Monat

Multiple wheat genomes reveal global variation in modern breeding
2020 · Sean Walkowiak, Liangliang Gao, et al. · Nature · 982
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The barley pan-genome reveals the hidden legacy of mutation breeding
2020 · Murukarthick Jayakodi, Sudharsan Padmarasu, et al. · Nature · 575
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TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools
2019 · Cécile Monat, Sudharsan Padmarasu, et al. · Genome biology · 265
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The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes
2018 · Philippe Cubry, Christine Tranchant-Dubreuil, et al. · Current Biology · 147
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Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding
2022 · Jean-Marc Aury, Stefan Engelen, et al. · GigaScience · 93
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The Aegilops ventricosa 2NvS segment in bread wheat: cytology, genomics and breeding
2020 · Liangliang Gao, Dal-Hoe Koo, et al. · Theoretical and Applied Genetics · 85
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Wheat Panache: A pangenome graph database representing presence–absence variation across sixteen bread wheat genomes
2022 · Philipp E. Bayer, Jakob Petereit, et al. · The Plant Genome · 78
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Prospects of pan-genomics in barley
2018 · Cécile Monat, Mona Schreiber, et al. · Theoretical and Applied Genetics · 53
De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time andFusarium-Resistant Genes in East Asian Genotypes
2020 · Kentaro K Shimizu, Dario Copetti, et al. · Plant and Cell Physiology · 45
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De novo annotation reveals transcriptomic complexity across the hexaploid wheat pan-genome
2025 · Benjamen White, Thomas Lux, et al. · Nature Communications · 35
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TOGGLE: toolbox for generic NGS analyses
2015 · Cécile Monat, Christine Tranchant-Dubreuil, et al. · BMC Bioinformatics · 33
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de novo assemblies of three Oryza glaberrima accessions provide first insights about pan-genome of African rices
2016 · Cécile Monat, Bérengère Pera, et al. · Genome Biology and Evolution · 27
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TOGGLe, a flexible framework for easily building complex workflows and performing robust large-scale NGS analyses
2018 · Christine Tranchant-Dubreuil, Sébastien Ravel, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 25
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LTRclassifier: A website for fast structural LTR retrotransposons classification in plants
2016 · Cecile Monat, Ndomassi Tando, et al. · Mobile Genetic Elements · 14
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DuplicationDetector , a light weight tool for duplication detection using NGS data
2017 · Gustave Djedatin, Cécile Monat, et al. · Current Plant Biology · 13
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Comparison of two African rice species through a new pan-genomic approach on massive data
2018 · Cécile Monat, Christine Tranchant-Dubreuil, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 7
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Purifying selection on deleterious variants affected by the combination of subgenomes and gene expression in bread wheat
2026 · Gwyneth Halstead-Nussloch, Moeko Okada, et al. · Cell Reports · 3
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Pangenomics in Crop Plants
2020 · Cécile Monat, François Sabot · Population genomics · 3
SaVanache: indexing and visualizing pangenome variation graphs
2026 · Mourdas Mohamed, Éloi Durant, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 1
Bread wheat genomes graph pangenome
2022 · Bayer, Philipp E, Petereit, Jakob, et al. · UWA Profiles and Research Repository (UWA) · 1
TOGGLE-3: A Framework to Build Quickly Pipelines and to Perform Large-Scale NGS Analysis. [P0469]
2017 · Christine Tranchant‐Dubreuil, Sébastien Ravel, et al. · Agritrop (Cirad)
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The South Green Bioinformatics platform, a comprehensive resource for crop genomics
2017 · Manuel Ruíz, Alexis Dereeper, et al. · Agritrop (Cirad)
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South Green bioinformatics platform : Plateforme collaborative de bioinformatique verte héraultaise
2017 · Stéphanie Bocs, David Couvin, et al. · Agritrop (Cirad)
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Pan-génome du riz africain cultivé Oryza glaberrima et son ancêtre sauvage Oryza barthii
2016 · Cécile Monat · theses.fr (ABES)
TOGGLE-3 : a tool for on the fly pipelines creation and performing robust large-scale NGS analyses
2016 · Ravel, Sébastien, Tranchan-Dubreuil, Christine, et al. · HAL
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Works count: 34
Citation count: 2,486
H-index: 14
I10-index: 15
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