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Raúl Ruiz

Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids
2020 · Santiago Redondo-Salvo, Raúl Fernández-López, et al. · Nature Communications · 438
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Transcription factor-based biosensors enlightened by the analyte
2015 · Raul Fernandez-López, Raul Ruiz, et al. · Frontiers in Microbiology · 139
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Diagnostics of Infections Produced by the Plant Viruses TMV, TEV, and PVX with CRISPR-Cas12 and CRISPR-Cas13
2022 · María-Carmen Marqués, Javier Sánchez-Vicente, et al. · ACS Synthetic Biology · 109
Determination of conjugation rates on solid surfaces
2012 · Irene del Campo, Raúl Ruiz, et al. · Plasmid · 55
Multiplexable and Biocomputational Virus Detection by CRISPR-Cas9-Mediated Strand Displacement
2023 · Rosa Márquez-Costa, Roser Montagud-Martínez, et al. · Analytical Chemistry · 28
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CRISPR-Cas12a-Based Detection of SARS-CoV-2 Harboring the E484K Mutation
2021 · María-Carmen Marqués, Raúl Ruiz, et al. · ACS Synthetic Biology · 24
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Detection of tomato brown rugose fruit virus through CRISPR-Cas12a and CRISPR-Cas9 systems
2025 · Masoud Besati, Mohammad Reza Safarnejad, et al. · Scientific Reports · 14
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Structural basis of direct and inverted DNA sequence repeat recognition by helix–turn–helix transcription factors
2022 · Raul Fernandez-Lopez, Raul Ruiz, et al. · Nucleic Acids Research · 11
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Negative feedback increases information transmission, enabling bacteria to discriminate sublethal antibiotic concentrations
2018 · Raul Ruiz, Fernando de la Cruz, et al. · Science Advances · 11
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CRISPR-Cas9 trans-cleavage is hindered by a flanked R-loop, an elongated spacer, and an inactive HNH domain
2026 · Roser Montagud-Martínez, Raúl Ruiz, et al. · Nature Communications · 8
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Virus Detection by CRISPR-Cas9-Mediated Strand Displacement in a Lateral Flow Assay
2025 · Roser Montagud-Martínez, Rosa Márquez-Costa, et al. · ACS Applied Bio Materials · 8
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Repurposing the mammalian RNA-binding protein Musashi-1 as an allosteric translation repressor in bacteria
2023 · Roswitha Dolcemascolo, María Heras-Hernández, et al. · eLife · 8
A variant-dependent molecular clock with anomalous diffusion models SARS-CoV-2 evolution in humans
2023 · Lucas Goiriz, Raúl Ruiz, et al. · Proceedings of the National Academy of Sciences · 6
New Bicistronic TALENs Greatly Improve Genome Editing
2020 · José María Martín‐Fernández, Aarne Fleischer, et al. · Current Protocols in Stem Cell Biology · 6
Numbers on the edges: A simplified and scalable method for quantifying the Gene Regulation Function
2010 · Raul Fernandez‐Lopez, Irene del Campo, et al. · BioEssays · 6
Rapid and Accurate Detection of the SARS-CoV-2 Omicron Variant with a CRISPR-Cas12a Reaction in the RT-qPCR Pot
2024 · Raúl Ruiz, Roser Montagud-Martínez, et al. · ACS Omega · 4
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Identification of the EH CRISPR‐Cas9 system on a metagenome and its application to genome engineering
2023 · Belen Esquerra-Ruvira, Ignacio Baquedano, et al. · Microbial Biotechnology · 4
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Widespread and Abundant CRISPR-Cas Systems in the Deep Ocean
2025 · Pablo Sánchez, Marta Ferri-Peradalta, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 3
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Probing the orthogonality and robustness of the mammalian RNA-binding protein Musashi-1 in Escherichia coli
2024 · Roswitha Dolcemascolo, Raúl Ruiz, et al. · Journal of Biological Engineering · 1
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Author Response: Repurposing the mammalian RNA-binding protein Musashi-1 as an allosteric translation repressor in bacteria
2024 · Roswitha Dolcemascolo, María Heras-Hernández, et al. · eLife · 1
Computational Design of Prokaryotic Translation Regulation Based on RNA-Binding Proteins
2026 · Raúl Ruiz, Álvaro Martínez-Martínez, et al. · Methods in molecular biology
Author Response: Repurposing the mammalian RNA-binding protein Musashi-1 as an allosteric translation repressor in bacteria
2024 · Roswitha Dolcemascolo, María Heras-Hernández, et al. · eLife
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Measuring Plasmid Conjugation Using Fluorescent Reporters
2019 · Carolina Palencia-Gandara, Raul Ruiz, et al. · Methods in molecular biology
Works count: 28
Citation count: 884
H-index: 9
I10-index: 9
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