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Shiri Freilich

Challenges in microbial ecology: building predictive understanding of community function and dynamics
2016 · Stefanie Widder, Rosalind J Allen, et al. · The ISME Journal · 756
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Competitive and cooperative metabolic interactions in bacterial communities
2011 · Shiri Freilich, Raphy Zarecki, et al. · Nature Communications · 581
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The large-scale organization of the bacterial network of ecological co-occurrence interactions
2010 · Shiri Freilich, Anat Kreimer, et al. · Nucleic Acids Research · 315
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Engineering natural microbiomes toward enhanced bioremediation by microbiome modeling
2024 · Zhepu Ruan, Kai Chen, et al. · Nature Communications · 258
Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data
2007 · Tom C Freeman, Leon Goldovsky, et al. · PLoS Computational Biology · 248
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Prospects for Biological Soilborne Disease Control: Application of Indigenous Versus Synthetic Microbiomes
2016 · Mark Mazzola, Shiri Freilich · Phytopathology · 243
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The biosynthetic pathway of the nonsugar, high-intensity sweetener mogroside V from Siraitia grosvenorii
2016 · Maxim Itkin, Rachel Davidovich-Rikanati, et al. · Proceedings of the National Academy of Sciences · 201
Modeling microbial communities from atrazine contaminated soils promotes the development of biostimulation solutions
2018 · Xihui Xu, Raphy Zarecki, et al. · The ISME Journal · 194
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Emergence, development and diversification of the TGF-β signalling pathway within the animal kingdom
2009 · Lukasz Huminiecki, Leon Goldovsky, et al. · BMC Evolutionary Biology · 192
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Global analysis of the apple fruit microbiome: are all apples the same?
2021 · Ahmed Abdelfattah, Shiri Freilich, et al. · Environmental Microbiology · 161
The COP9 signalosome is essential for development of Drosophila melanogaster
1999 · Shiri Freilich, Efrat Oron, et al. · Current Biology · 152
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Association between translation efficiency and horizontal gene transfer within microbial communities
2011 · Tamir Tuller, Yana Girshovich, et al. · Nucleic Acids Research · 130
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Compositional shifts in the strawberry fruit microbiome in response to near-harvest application of Metschnikowia fructicola, a yeast biocontrol agent
2021 · V. Yeka Zhimo, Ajay Kumar, et al. · Postharvest Biology and Technology · 109
Effect of Washing, Waxing and Low-Temperature Storage on the Postharvest Microbiome of Apple
2020 · Ahmed Abdelfattah, Susan R. Whitehead, et al. · Microorganisms · 106
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Metabolic-network-driven analysis of bacterial ecological strategies
2009 · Shiri Freilich, Anat Kreimer, et al. · Genome biology · 102
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NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation
2015 · Roie Levy, Rogan Carr, et al. · BMC Bioinformatics · 98
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Analysis of Microbial Functions in the Rhizosphere Using a Metabolic-Network Based Framework for Metagenomics Interpretation
2017 · Shany Ofaim, Maya Ofek-Lalzar, et al. · Frontiers in Microbiology · 78
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Variations in the identity and complexity of endosymbiont combinations in whitefly hosts
2014 · Einat Zchori-Fein, Tamar Lahav, et al. · Frontiers in Microbiology · 77
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To B or Not to B: Comparative Genomics Suggests Arsenophonus as a Source of B Vitamins in Whiteflies
2018 · Diego Santos-Garcia, Ksenia Juravel, et al. · Frontiers in Microbiology · 74
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A framework for the targeted recruitment of crop-beneficial soil taxa based on network analysis of metagenomics data
2023 · Maria Berihu, Tracey S. Somera, et al. · Microbiome · 64
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The pathobiome concept applied to postharvest pathology and its implication on biocontrol strategies
2022 · Samir Droby, V. Yeka Zhimo, et al. · Postharvest Biology and Technology · 53
Systems approach for exploring the intricate associations between sweetness, color and aroma in melon fruits
2015 · Shiri Freilich, Shery Lev, et al. · BMC Plant Biology · 51
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Modeling trophic dependencies and exchanges among insects’ bacterial symbionts in a host-simulated environment
2018 · Itai Opatovsky, Diego Santos-Garcia, et al. · BMC Genomics · 50
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Electron acceptors determine the BTEX degradation capacity of anaerobic microbiota via regulating the microbial community
2022 · Zhiming Wu, Guiping Liu, et al. · Environmental Research · 49
NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species
2012 · Anat Kreimer, Adi Doron-Faigenboim, et al. · Bioinformatics · 49
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Works count: 128
Citation count: 5,323
H-index: 33
I10-index: 62
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