Author

Ruiqi Lyu

Observed name: Lyu, Ruiqi

Institution: Carnegie Mellon University

Observed institutions: Shanghai Jiao Tong University, Carnegie Mellon University

ORCID: 0000-0001-7062-1476

Observed ORCID: 0000-0001-7062-1476

OpenAlex ID: A5016993477

Methodological Considerations in Longitudinal Analyses of Microbiome Data: A Comprehensive Review

2023 · Ruiqi Lyu, Yixiang Qu, et al. · Genes · 43

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Comprehensive evaluation of methods for differential expression analysis of metatranscriptomics data

2023 · Hunyong Cho, Yixiang Qu, et al. · Briefings in Bioinformatics · 25

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SMetABF: A rapid algorithm for Bayesian GWAS meta-analysis with a large number of studies included

2022 · Jianle Sun, Ruiqi Lyu, et al. · PLoS Computational Biology · 9

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Scalable identification of lineage-specific gene regulatory networks from metacells with NetID

2024 · Weixu Wang, Yichen Wang, et al. · Genome biology · 8

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Federated epidemic surveillance

2025 · Ruiqi Lyu, Roni Rosenfeld, et al. · PLoS Computational Biology · 7

GESLM algorithm for detecting causal SNPs in GWAS with multiple phenotypes

2021 · Ruiqi Lyu, Jianle Sun, et al. · Briefings in Bioinformatics · 6

Deep-learning-based interpolation of longitudinal microbiome data powers biologically informative discovery

2025 · Yixiang Qu, Ruiqi Lyu, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 4

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Comprehensive evaluation of methods for differential expression analysis of metatranscriptomics data

2021 · Hunyong Cho, Yixiang Qu, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 3

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SpatialEpiBench: Benchmarking Spatial Information and Epidemic Priors in Forecasting

2026 · Lyu, Ruiqi, Turcan, Alistair, et al. · arXiv (Cornell University) · 2

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Predicting Language Models’ Success at Zero-Shot Probabilistic Prediction

2025 · Kevin Ren, Santiago Cortes-Gomez, et al. · Findings of the Association for Computational Linguistics: EMNLP (Findings of EMNLP) · 2

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Combining digital data streams and epidemic networks for real time outbreak detection

2025 · Lyu, Ruiqi, Turcan, Alistair, et al. · arXiv (Cornell University) · 1

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Meta-analysis on the association between rs11868035, rs823144, rs3851179 and Parkinson's disease

2021 · Jianle Sun, Luojia Deng, et al. · Meta Gene · 1

Population-Robust Feature Selection via Generalized Welfare Optimization

2026 · Lyu, Ruiqi, Turcan, Alistair, et al. · arXiv (Cornell University)

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Explaining Concept Shift with Interpretable Feature Attribution

2025 · Lyu, Ruiqi, Turcan, Alistair, et al. · arXiv (Cornell University)

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Works count: 19

Citation count: 113

H-index: 6

I10-index: 2