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Sander Willems

Observed name: Willems, Sander
ORCID: 0000-0002-7124-610X
Observed ORCID: 0000-0002-7124-610X
OpenAlex ID: A5017081092
Rapid and In-Depth Coverage of the (Phospho-)Proteome With Deep Libraries and Optimal Window Design for dia-PASEF
2022 · Patricia Skowronek, Marvin Thielert, et al. · Molecular & Cellular Proteomics · 306
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AlphaPeptDeep: a modular deep learning framework to predict peptide properties for proteomics
2022 · Wen-Feng Zeng, Xie-Xuan Zhou, et al. · Nature Communications · 234
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The structural context of posttranslational modifications at a proteome-wide scale
2022 · Isabell Bludau, Sander Willems, et al. · PLoS Biology · 129
Integrative Proteomic Profiling Reveals PRC2-Dependent Epigenetic Crosstalk Maintains Ground-State Pluripotency
2018 · Guido van Mierlo, René A.M. Dirks, et al. · Cell stem cell · 117
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AlphaPept: a modern and open framework for MS-based proteomics
2024 · Maximilian T. Strauss, Isabell Bludau, et al. · Nature Communications · 73
Accurate Label-Free Quantification by directLFQ to Compare Unlimited Numbers of Proteomes
2023 · Constantin Ammar, Julia Patricia Schessner, et al. · Molecular & Cellular Proteomics · 71
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A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics
2022 · Bart Van Puyvelde, Simon Daled, et al. · Scientific Data · 67
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Synchro-PASEF Allows Precursor-Specific Fragment Ion Extraction and Interference Removal in Data-Independent Acquisition
2022 · Patricia Skowronek, Florian Krohs, et al. · Molecular & Cellular Proteomics · 63
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Proteins involved in embryo-maternal interaction around the signalling of maternal recognition of pregnancy in the horse
2018 · Katrien Smits, Sander Willems, et al. · Scientific Reports · 58
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Statistical framework for detection of genetically modified organisms based on Next Generation Sequencing
2015 · Sander Willems, Marie-Alice Fraiture, et al. · Food Chemistry · 54
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Removing the Hidden Data Dependency of DIA with Predicted Spectral Libraries
2020 · Bart Van Puyvelde, Sander Willems, et al. · PROTEOMICS · 48
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Forensic tri-allelic SNP genotyping using nanopore sequencing
2018 · Senne Cornelis, Yannick Gansemans, et al. · Forensic Science International Genetics · 46
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AlphaTims: Indexing Trapped Ion Mobility Spectrometry–TOF Data for Fast and Easy Accession and Visualization
2021 · Sander Willems, Eugenia Voytik, et al. · Molecular & Cellular Proteomics · 44
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Cov-MS: A Community-Based Template Assay for Mass-Spectrometry-Based Protein Detection in SARS-CoV-2 Patients
2021 · Bart Van Puyvelde, Katleen Van Uytfanghe, et al. · JACS Au · 40
AlphaDIA enables DIA transfer learning for feature-free proteomics
2025 · Georg Wallmann, Patricia Skowronek, et al. · Nature Biotechnology · 39
An accessible workflow for high-sensitivity proteomics using parallel accumulation–serial fragmentation (PASEF)
2025 · Patricia Skowronek, Georg Wallmann, et al. · Nature Protocols · 39
Tackling aspecific side reactions during histone propionylation: The promise of reversing overpropionylation
2016 · Paulien Meert, Sebastiaan Dierickx, et al. · PROTEOMICS · 32
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Extracting histones for the specific purpose of label‐free MS
2016 · Elisabeth Govaert, Katleen Van Steendam, et al. · PROTEOMICS · 29
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Comparison of fractionation proteomics for local SWATH library building
2017 · Elisabeth Govaert, Katleen Van Steendam, et al. · PROTEOMICS · 27
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AlphaMap: an open-source Python package for the visual annotation of proteomics data with sequence-specific knowledge
2021 · Eugenia Voytik, Isabell Bludau, et al. · Bioinformatics · 22
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Untargeted histone profiling during naive conversion uncovers conserved modification markers between mouse and human
2019 · Laura De Clerck, Jasin Taelman, et al. · Scientific Reports · 20
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Forensic STR profiling using Oxford Nanopore Technologies’ MinION sequencer
2018 · Senne Cornelis, Sander Willems, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 20
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Comprehensive histone epigenetics: A mass spectrometry based screening assay to measure epigenetic toxicity
2020 · Sigrid Verhelst, Laura De Clerck, et al. · MethodsX · 19
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A large scale mass spectrometry-based histone screening for assessing epigenetic developmental toxicity
2022 · Sigrid Verhelst, Bart Van Puyvelde, et al. · Scientific Reports · 17
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Histone Sample Preparation for Bottom-Up Mass Spectrometry: A Roadmap to Informed Decisions
2021 · Simon Daled, Sander Willems, et al. · Proteomes · 17
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Works count: 45
Citation count: 1,746
H-index: 20
I10-index: 27
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