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Author

Daniele Ramazzotti

Observed names: Bo Wang [Aut], Daniele Ramazzotti [Aut, Cre], Luca De Sano[Aut], Junjie Zhu [Ctb], Emma Pierson [Ctb], Serafim Batzoglou[Ctb], D. Ramazzotti, Ramazzotti D, Ramazzotti Daniele, Ramazzotti, D, Ramazzotti, D., Ramazzotti, Daniele
Observed institutions: University of California, Los Angeles, University of Milan, Azienda Ospedaliera San Gerardo, Stanford Medicine, New York University, Massachusetts Institute of Technology, University of Milano-Bicocca, Stanford University
ORCID: 0000-0002-6087-2666
Observed ORCID: 0000-0002-6087-2666
OpenAlex ID: A5022687646
Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning
2017 · Bo Wang, Junjie Zhu, et al. · Nature Methods · 710
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Multi-omic tumor data reveal diversity of molecular mechanisms that correlate with survival
2018 · Daniele Ramazzotti, Avantika Lal, et al. · Nature Communications · 224
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Phenotypic plasticity and genetic control in colorectal cancer evolution
2022 · Jacob Househam, Timon Heide, et al. · Nature · 199
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Detecting repeated cancer evolution from multi-region tumor sequencing data
2018 · Giulio Caravagna, Ylenia Giarratano, et al. · Nature Methods · 164
The co-evolution of the genome and epigenome in colorectal cancer
2022 · Timon Heide, Jacob Househam, et al. · Nature · 145
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SIMLR: A Tool for Large‐Scale Genomic Analyses by Multi‐Kernel Learning
2017 · Bo Wang, Daniele Ramazzotti, et al. · PROTEOMICS · 141
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Algorithmic methods to infer the evolutionary trajectories in cancer progression
2016 · Giulio Caravagna, Alex Graudenzi, et al. · Proceedings of the National Academy of Sciences · 94
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CAPRI: efficient inference of cancer progression models from cross-sectional data
2015 · Daniele Ramazzotti, Giulio Caravagna, et al. · Bioinformatics · 92
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Exposing the probabilistic causal structure of discrimination
2017 · Francesco Bonchi, Sara Hajian, et al. · International Journal of Data Science and Analytics · 89
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Contribution of pks+ E. coli mutations to colorectal carcinogenesis
2023 · Bingjie Chen, Daniele Ramazzotti, et al. · Nature Communications · 82
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Mutational signatures and heterogeneous host response revealed via large-scale characterization of SARS-CoV-2 genomic diversity
2021 · Alex Graudenzi, Davide Maspero, et al. · iScience · 79
OncoScore: a novel, Internet-based tool to assess the oncogenic potential of genes
2017 · Rocco Piazza, Daniele Ramazzotti, et al. · Scientific Reports · 71
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Inferring Tree Causal Models of Cancer Progression with Probability Raising
2014 · Loes Olde Loohuis, Giulio Caravagna, et al. · PLoS ONE · 66
Large-scale analysis of SARS-CoV-2 synonymous mutations reveals the adaptation to the human codon usage during the virus evolution
2022 · Daniele Ramazzotti, Fabrizio Angaroni, et al. · Virus Evolution · 63
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Learning the Structure of Bayesian Networks: A Quantitative Assessment of the Effect of Different Algorithmic Schemes
2018 · Stefano Beretta, Mauro Castelli, et al. · Complexity · 58
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Data Pre-processing
2016 · Brian Malley, Daniele Ramazzotti, et al. · Springer eBooks · 58
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Improved Survival of Cancer Patients Admitted to the Intensive Care Unit between 2002 and 2011 at a U.S. Teaching Hospital
2018 · Christopher Martin Sauer, Jinghui Dong, et al. · Cancer Research and Treatment · 48
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TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data
2016 · Luca De Sano, Giulio Caravagna, et al. · Bioinformatics · 42
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De novo mutational signature discovery in tumor genomes using SparseSignatures
2021 · Avantika Lal, Keli Liu, et al. · PLoS Computational Biology · 41
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Tumor evolution metrics predict recurrence beyond 10 years in locally advanced prostate cancer
2024 · Javier Fernandez-Mateos, George D. Cresswell, et al. · Nature Cancer · 35
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Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data
2019 · Daniele Ramazzotti, Alex Graudenzi, et al. · BMC Bioinformatics · 35
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LACE: Inference of cancer evolution models from longitudinal single-cell sequencing data
2021 · Daniele Ramazzotti, Fabrizio Angaroni, et al. · Journal of Computational Science · 34
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Erratum: OncoScore: a novel, Internet-based tool to assess the oncogenic potential of genes
2017 · Rocco Piazza, Daniele Ramazzotti, et al. · Scientific Reports · 33
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Comprehensive genomic characterization of breast tumors with BRCA1 and BRCA2 mutations
2019 · Avantika Lal, Daniele Ramazzotti, et al. · BMC Medical Genomics · 32
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VERSO: A comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples
2021 · Daniele Ramazzotti, Fabrizio Angaroni, et al. · Patterns · 30
Works count: 181
Citation count: 3,183
H-index: 26
I10-index: 47
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