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Manuel Rueda

GA4GH: International policies and standards for data sharing across genomic research and healthcare
2021 · Heidi L. Rehm, Angela J.H. Page, et al. · Cell Genomics · 361
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Status of GPCR Modeling and Docking as Reflected by Community-wide GPCR Dock 2010 Assessment
2011 · Irina Kufareva, Manuel Rueda, et al. · Structure · 282
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Whole-Genome Sequencing of a Healthy Aging Cohort
2016 · Galina A. Erikson, Dale L. Bodian, et al. · Cell · 234
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A consensus view of protein dynamics
2007 · Manuel Rueda, Carles Ferrer-Costa, et al. · Proceedings of the National Academy of Sciences · 228
Correlated ab initio study of nucleic acid bases and their tautomers in the gas phase, in a microhydrated environment and in aqueous solution : Part 1. Cytosine
2002 · Semen A. Trygubenko, Tetyana V. Bogdan, et al. · Physical Chemistry Chemical Physics · 191
Recipes for the Selection of Experimental Protein Conformations for Virtual Screening
2009 · Manuel Rueda, Giovanni Bottegoni, et al. · Journal of Chemical Information and Modeling · 178
MoDEL (Molecular Dynamics Extended Library): A Database of Atomistic Molecular Dynamics Trajectories
2010 · Tim Meyer, Marco D'Abramo, et al. · Structure · 160
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The European Genome-phenome Archive in 2021
2021 · Mallory Ann Freeberg, Lauren A Fromont, et al. · Nucleic Acids Research · 157
Thorough Validation of Protein Normal Mode Analysis: A Comparative Study with Essential Dynamics
2007 · Manuel Rueda, Pablo Chacón, et al. · Structure · 154
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GPCR 3D homology models for ligand screening: Lessons learned from blind predictions of adenosine A2a receptor complex
2009 · Vsevolod Katritch, Manuel Rueda, et al. · Proteins Structure Function and Bioinformatics · 141
The Structure and Dynamics of DNA in the Gas Phase
2003 · Manuel Rueda, Susana G. Kalko, et al. · Journal of the American Chemical Society · 125
Essential Dynamics: A Tool for Efficient Trajectory Compression and Management
2006 · Tim Meyer, Carles Ferrer-Costa, et al. · Journal of Chemical Theory and Computation · 118
Consistent Improvement of Cross-Docking Results Using Binding Site Ensembles Generated with Elastic Network Normal Modes
2009 · Manuel Rueda, Giovanni Bottegoni, et al. · Journal of Chemical Information and Modeling · 116
Exploring the Counterion Atmosphere around DNA: What Can Be Learned from Molecular Dynamics Simulations?
2004 · Manuel Rueda, Elena Cubero, et al. · Biophysical Journal · 106
Systematic Exploitation of Multiple Receptor Conformations for Virtual Ligand Screening
2011 · Giovanni Bottegoni, Walter Rocchia, et al. · PLoS ONE · 100
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Re-analysis of whole-exome sequencing data uncovers novel diagnostic variants and improves molecular diagnostic yields for sudden death and idiopathic diseases
2019 · Elias L. Salfati, Emily G. Spencer, et al. · Genome Medicine · 95
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G-Quadruplexes Can Maintain Their Structure in the Gas Phase
2006 · Manuel Rueda, F. Javier Luque, et al. · Journal of the American Chemical Society · 88
FlexServ: an integrated tool for the analysis of protein flexibility
2009 · Jordi Camps, Oliver Carrillo, et al. · Bioinformatics · 87
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Approaching Elastic Network Models to Molecular Dynamics Flexibility
2010 · Laura Orellana, Manuel Rueda, et al. · Journal of Chemical Theory and Computation · 74
Beacon v2 and Beacon networks: A “lingua franca” for federated data discovery in biomedical genomics, and beyond
2022 · Jordi Rambla, Michael Baudis, et al. · Human Mutation · 72
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Exploring the Essential Dynamics of B-DNA
2005 · Alberto Pérez, José Ramón Blas, et al. · Journal of Chemical Theory and Computation · 66
Molecular Autopsy for Sudden Unexpected Death
2016 · Ali Torkamani, Evan D. Muse, et al. · JAMA · 53
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Ligand-Guided Receptor Optimization
2011 · Vsevolod Katritch, Manuel Rueda, et al. · Methods in molecular biology · 52
Exploring the Suitability of Coarse-Grained Techniques for the Representation of Protein Dynamics
2008 · Agustí Emperador, Oliver Carrillo, et al. · Biophysical Journal · 49
ALiBERO: Evolving a Team of Complementary Pocket Conformations Rather than a Single Leader
2012 · Manuel Rueda, Max Totrov, et al. · Journal of Chemical Information and Modeling · 45
Works count: 73
Citation count: 3,743
H-index: 30
I10-index: 40
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