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Marc D. Auffret

Temperature sensitivity of soil respiration rates enhanced by microbial community response
2014 · Kristiina Karhu, Marc D. Auffret, et al. · Nature · 772
Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery
2019 · Robert D. Stewart, Marc D. Auffret, et al. · Nature Biotechnology · 611
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Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
2018 · Robert D. Stewart, Marc D. Auffret, et al. · Nature Communications · 575
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The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle
2017 · Marc D. Auffret, Richard J. Dewhurst, et al. · Microbiome · 225
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Bovine host genome acts on rumen microbiome function linked to methane emissions
2022 · Marina Martínez-Álvaro, Marc D. Auffret, et al. · Communications Biology · 121
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Identification of Complex Rumen Microbiome Interaction Within Diverse Functional Niches as Mechanisms Affecting the Variation of Methane Emissions in Bovine
2020 · Marina Martínez-Álvaro, Marc D. Auffret, et al. · Frontiers in Microbiology · 117
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Degradation of a Mixture of Hydrocarbons, Gasoline, and Diesel Oil Additives by Rhodococcus aetherivorans and Rhodococcus wratislaviensis
2009 · Marc Auffret, Diane Labbé, et al. · Applied and Environmental Microbiology · 110
Identification of Rumen Microbial Genes Involved in Pathways Linked to Appetite, Growth, and Feed Conversion Efficiency in Cattle
2019 · Joana Lima, Marc D. Auffret, et al. · Frontiers in Genetics · 92
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Identification, Comparison, and Validation of Robust Rumen Microbial Biomarkers for Methane Emissions Using Diverse Bos Taurus Breeds and Basal Diets
2018 · Marc D. Auffret, Robert Stewart, et al. · Frontiers in Microbiology · 91
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Impact of water quality on the bacterial populations and off-flavours in recirculating aquaculture systems
2012 · Marc Auffret, Étienne Yergeau, et al. · FEMS Microbiology Ecology · 87
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The Role of Microbial Community Composition in Controlling Soil Respiration Responses to Temperature
2016 · Marc D. Auffret, Kristiina Karhu, et al. · PLoS ONE · 76
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Importance of Rhodococcus strains in a bacterial consortium degrading a mixture of hydrocarbons, gasoline, and diesel oil additives revealed by metatranscriptomic analysis
2014 · Marc D. Auffret, Etienne Yergeau, et al. · Applied Microbiology and Biotechnology · 70
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Establishment of a real-time PCR method for quantification of geosmin-producing Streptomyces spp. in recirculating aquaculture systems
2011 · Marc Auffret, Alexandre Pilote, et al. · Water Research · 66
Identification of Microbial Genetic Capacities and Potential Mechanisms Within the Rumen Microbiome Explaining Differences in Beef Cattle Feed Efficiency
2020 · Marc D. Auffret, Robert D. Stewart, et al. · Frontiers in Microbiology · 65
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Temporal stability of the rumen microbiota in beef cattle, and response to diet and supplements
2019 · Timothy J. Snelling, Marc D. Auffret, et al. · Animal Microbiome · 55
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Microbiome-driven breeding strategy potentially improves beef fatty acid profile benefiting human health and reduces methane emissions
2022 · Marina Martínez-Álvaro, Jennifer Mattock, et al. · Microbiome · 44
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Open prediction of polysaccharide utilisation loci (PUL) in 5414 public Bacteroidetes genomes using PULpy
2018 · Rob D. Stewart, Marc D. Auffret, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 38
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MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs)
2018 · Robert D Stewart, Marc D Auffret, et al. · Bioinformatics · 37
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Identification of intestinal and fecal microbial biomarkers using a porcine social stress model
2023 · Tuan Q. Nguyen, Marina Martínez-Álvaro, et al. · Frontiers in Microbiology · 36
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Unravelling the Role of Rumen Microbial Communities, Genes, and Activities on Milk Fatty Acid Profile Using a Combination of Omics Approaches
2021 · Sokratis Stergiadis, Irene Cabeza-Luna, et al. · Frontiers in Microbiology · 32
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Temporal stability of the rumen microbiome and its longitudinal associations with performance traits in beef cattle
2024 · Joana Lima, Marina Martínez-Álvaro, et al. · Scientific Reports · 19
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In vitro rumen degradation, fermentation, and methane production of four agro-industrial protein-rich co-products, compared with soyabean meal
2024 · Christos Christodoulou, Kirsty E. Kliem, et al. · Animal Feed Science and Technology · 18
Impact of seasonal temperature transition, alkalinity and other abiotic factors on the persistence of viruses in swine and dairy manures
2018 · Marc D. Auffret, Julie Brassard, et al. · The Science of The Total Environment · 16
Different microbial genera drive methane emissions in beef cattle fed with two extreme diets
2023 · Gemma A. Miller, Marc D. Auffret, et al. · Frontiers in Microbiology · 15
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Nutrient use and methane emissions in growing beef fed different protein sources and a pasture-based diet
2025 · Christos Christodoulou, Kirsty E Kliem, et al. · Journal of Animal Science · 8
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Works count: 53
Citation count: 3,422
H-index: 20
I10-index: 24
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