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Pavlos Stephanos Bekiaris

Observed names: Bekiaris, Pavlos, Bekiaris, Pavlos Stephanos
ORCID: 0000-0002-3047-4253
Observed ORCID: 0000-0002-3047-4253
OpenAlex ID: A5024811098
Automatic construction of metabolic models with enzyme constraints
2020 · Pavlos Stephanos Bekiaris, Steffen Klamt · BMC Bioinformatics · 119
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StrainDesign: a comprehensive Python package for computational design of metabolic networks
2022 · Philipp Schneider, Pavlos Stephanos Bekiaris, et al. · Bioinformatics · 32
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CNApy: a CellNetAnalyzer GUI in Python for analyzing and designing metabolic networks
2021 · Sven Thiele, Axel von Kamp, et al. · Bioinformatics · 28
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Designing microbial communities to maximize the thermodynamic driving force for the production of chemicals
2021 · Pavlos Stephanos Bekiaris, Steffen Klamt · PLoS Computational Biology · 25
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Network-wide thermodynamic constraints shape NAD(P)H cofactor specificity of biochemical reactions
2023 · Pavlos Stephanos Bekiaris, Steffen Klamt · Nature Communications · 22
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COBRA-k: A powerful framework bridging constraint-based and kinetic metabolic modeling
2026 · Pavlos Stephanos Bekiaris, Steffen Klamt · Science Advances · 10
Efficiency of acetate-based isopropanol synthesis in Escherichia coli W is controlled by ATP demand
2024 · Regina Kutscha, Tamara Tomin, et al. · Biotechnology for Biofuels and Bioproducts · 5
Computational exploration of cis-regulatory modules in rhythmic expression data using the “Exploration of Distinctive CREs and CRMs” (EDCC) and “CRM Network Generator” (CNG) programs
2018 · Pavlos Stephanos Bekiaris, Tobias Tekath, et al. · PLoS ONE · 2
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klamt-lab/SACA_calculations: 1.0
2026 · Pavlos Stephanos Bekiaris · Zenodo (CERN European Organization for Nuclear Research)
Understanding systems level metabolic adaptation resulting from osmotic stress
2024 · Alexandre Tremblay, Pavlos Stephanos Bekiaris, et al. · bioRxiv (Cold Spring Harbor Laboratory)
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Optimization of metabolic states
2023 · Kremling, Andreas, Liebermeister, Wolfram, et al. · HAL
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MOESM3 of Automatic construction of metabolic models with enzyme constraints
2020 · Bekiaris, Pavlos, Klamt, Steffen · Figshare
MOESM2 of Automatic construction of metabolic models with enzyme constraints
2020 · Bekiaris, Pavlos, Klamt, Steffen · Figshare
Works count: 25
Citation count: 244
H-index: 6
I10-index: 6
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