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Tramy Nguyen

Observed names: Nguyen, Tramy, Tramy T Nguyen, Tramy T. Nguyen
ORCID: 0000-0002-8035-0259
Observed ORCID: 0000-0002-8035-0259
OpenAlex ID: A5028414498
SBML Level 3: an extensible format for the exchange and reuse of biological models
2020 · Sarah M Keating, Dagmar Waltemath, et al. · Molecular Systems Biology · 310
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i B io S im 3: A Tool for Model-Based Genetic Circuit Design
2018 · Leandro Watanabe, Tramy Nguyen, et al. · ACS Synthetic Biology · 81
Sharing Structure and Function in Biological Design with SBOL 2.0
2016 · Nicholas Roehner, Jacob Beal, et al. · ACS Synthetic Biology · 81
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0
2018 · Robert Sidney Cox, Curtis Madsen, et al. · Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics · 63
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A standard-enabled workflow for synthetic biology
2017 · Chris J. Myers, Jacob Beal, et al. · Biochemical Society Transactions · 42
Communicating Structure and Function in Synthetic Biology Diagrams
2019 · Jacob Beal, Tramy Nguyen, et al. · ACS Synthetic Biology · 38
Synthetic Biology Open Language (SBOL) Version 2.0.0
2015 · Bryan Bartley, Jacob Beal, et al. · Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics · 38
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Synthetic Biology Open Language (SBOL) Version 2.3
2019 · Curtis Madsen, Angel Goñi Moreno, et al. · Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics · 37
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A Computational Workflow for the Automated Generation of Models of Genetic Designs
2018 · Göksel Misirli, Tramy Nguyen, et al. · ACS Synthetic Biology · 33
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Synthetic Biology Open Language (SBOL) Version 2.0.0
2015 · Bartley, Bryan, Beal, Jacob, et al. · PubMed · 32
Synthetic Biology Open Language (SBOL) Version 2.2.0
2018 · Robert Sidney Cox, Curtis Madsen, et al. · Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics · 31
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Generating Systems Biology Markup Language Models from the Synthetic Biology Open Language
2015 · Nicholas Roehner, Zhen Zhang, et al. · ACS Synthetic Biology · 28
libSBOLj 2.0: A Java Library to Support SBOL 2.0
2015 · Zhen Zhang, Tramy Nguyen, et al. · IEEE Life Sciences Letters · 25
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A Converter from the Systems Biology Markup Language to the Synthetic Biology Open Language
2015 · Tramy Nguyen, Nicholas Roehner, et al. · ACS Synthetic Biology · 21
Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop
2023 · Breschine Cummins, Justin Vrana, et al. · Synthetic Biology · 19
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Synthetic Biology Open Language (SBOL) Version 2.1.0
2016 · Jacob Beal, Robert Sidney Cox, et al. · Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics · 18
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Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1
2019 · Curtis Madsen, Angel Goni Moreno, et al. · Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics · 17
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Design of Asynchronous Genetic Circuits
2019 · Tramy Nguyen, Timothy S. Jones, et al. · Proceedings of the IEEE · 16
pySBOL: A Python Package for Genetic Design Automation and Standardization
2018 · Bryan A. Bartley, Kiri Choi, et al. · ACS Synthetic Biology · 16
Synthetic biology open language visual (SBOL visual) version 2.2
2020 · Hasan Baig, Pedro Fontanarrosa, et al. · Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics · 13
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Synthetic biology open language visual (SBOL Visual) version 2.3
2021 · Hasan Baig, Pedro Fontanarossa, et al. · Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics · 12
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Highly-automated, high-throughput replication of yeast-based logic circuit design assessments
2022 · Robert P. Goldman, Robert Moseley, et al. · Synthetic Biology · 9
Round Trip: An Automated Pipeline for Experimental Design, Execution, and Analysis
2022 · Daniel Bryce, Robert P. Goldman, et al. · ACS Synthetic Biology · 9
Intent Parser: A Tool for Codification and Sharing of Experimental Design
2021 · Tramy Nguyen, Nicholas Walczak, et al. · ACS Synthetic Biology · 6
Computational Prediction of Synthetic Circuit Function Across Growth Conditions
2022 · Breschine Cummins, Robert C. Moseley, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2
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Works count: 32
Citation count: 1,002
H-index: 17
I10-index: 21
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