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Aleksi Kallio

Hadoop-BAM: directly manipulating next generation sequencing data in the cloud
2012 · Matti Niemenmaa, Aleksi Kallio, et al. · Bioinformatics · 127
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SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop
2013 · André Schumacher, Luca Pireddu, et al. · Bioinformatics · 95
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MicroRNA Expression Profiling Reveals MiRNA Families Regulating Specific Biological Pathways in Mouse Frontal Cortex and Hippocampus
2011 · Juuso Juhila, Tessa Sipilä, et al. · PLoS ONE · 81
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Experiences with workflows for automating data-intensive bioinformatics
2015 · Ola Spjuth, Erik Bongcam-Rudloff, et al. · Biology Direct · 73
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Multisubstituted pyrimidines effectively inhibit bacterial growth and biofilm formation of Staphylococcus aureus
2021 · Riccardo Provenzani, Paola San-Martin-Galindo, et al. · Scientific Reports · 32
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Optimized detection of differential expression in global profiling experiments: case studies in clinical transcriptomic and quantitative proteomic datasets
2009 · Laura L. Elo, Jukka Hiissa, et al. · Briefings in Bioinformatics · 30
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Quantitative Analysis of Colony Morphology in Yeast
2014 · Pekka Ruusuvuori, Jake Lin, et al. · BioTechniques · 25
Randomization of real-valued matrices for assessing the significance of data mining results
2008 · Markus Ojala, Niko Vuokko, et al. · SIAM International Conference on Data Mining · 24
Recommendations on e-infrastructures for next-generation sequencing
2016 · Ola Spjuth, Erik Bongcam-Rudloff, et al. · GigaScience · 22
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Randomization methods for assessing data analysis results on real‐valued matrices
2009 · Markus Ojala, Niko Vuokko, et al. · Statistical Analysis and Data Mining The ASA Data Science Journal · 20
A digital twin for real-time biodiversity forecasting with citizen science data
2026 · Otso Ovaskainen, Steven Winter, et al. · Nature Ecology & Evolution · 18
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R, Programming Language
2013 · Jarno Tuimala, Aleksi Kallio · Springer eBooks · 17
Randomization techniques for assessing the significance of gene periodicity results
2011 · Aleksi Kallio, Niko Vuokko, et al. · BMC Bioinformatics · 16
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Individual FEV1 Trajectories Can Be Identified from a COPD Cohort
2016 · Jukka Koskela, Milla Katajisto, et al. · COPD Journal of Chronic Obstructive Pulmonary Disease · 13
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Correlations and Co-Occurrences of Taxa: the Role of Temporal, Geographic and Taxonomic Restrictions
2011 · Aleksi Kallio, Kai Puolamäki, et al. · Palaeontologia Electronica · 12
A Mobile Application–Based Citizen Science Product to Compile Bird Observations
2024 · Ossi Nokelainen, Patrik Lauha, et al. · Citizen Science Theory and Practice · 11
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The EU project Real4Reg: unlocking real-world data with AI
2025 · Jonas Peltner, Cornelia Becker, et al. · Health Research Policy and Systems · 9
Biolmg.org: A Catalog of Virtual Machine Images for the Life Sciences
2015 · Martin Dahlö, Frέdέric Haziza, et al. · Bioinformatics and Biology Insights · 9
Automaattisen sisällönkuvailun ohjelmiston rakentaminen – case Annif
2022 · Mikko Lappalainen, Juha Hulkkonen, et al. · Signum · 7
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Optimized detection of transcription factor-binding sites in ChIP-seq experiments
2011 · Laura L. Elo, Aleksi Kallio, et al. · Nucleic Acids Research · 6
Properties of Fixed-Fixed Models and Alternatives in Presence-Absence Data Analysis
2016 · Aleksi Kallio · PLoS ONE · 3
POMO - Plotting Omics analysis results for Multiple Organisms
2013 · Jake Lin, Richard Kreisberg, et al. · BMC Genomics · 3
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Scripting for large-scale sequencing based on Hadoop
2013 · André Schumacher, Luca Pireddu, et al. · EMBnet journal · 2
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Data Mining
2013 · Aleksi Kallio, Jarno Tuimala · Springer eBooks · 2
Biologist-friendly analysis software for NGS data
2013 · Aleksi Kallio, Taavi Hupponen, et al. · EMBnet journal · 1
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Works count: 47
Citation count: 661
H-index: 13
I10-index: 16
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