Get started
Author

Brian C. Tjaden

De novo assembly of bacterial transcriptomes from RNA-seq data
2015 · Brian Tjaden · Genome biology · 1,700
PDF
Computational analysis of bacterial RNA-Seq data
2013 · Ryan McClure, Divya Balasubramanian, et al. · Nucleic Acids Research · 600
Global analysis of small RNA and mRNA targets of Hfq
2003 · Aixia Zhang, Karen M. Wassarman, et al. · Molecular Microbiology · 556
PDF
The Entomopathogenic Bacterial Endosymbionts Xenorhabdus and Photorhabdus: Convergent Lifestyles from Divergent Genomes
2011 · John M. Chaston, Garret Suen, et al. · PLoS ONE · 214
PDF
TargetRNA2: identifying targets of small regulatory RNAs in bacteria
2014 · Mary Beth Kery, Monica Feldman, et al. · Nucleic Acids Research · 211
PDF
Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays
2002 · Brian Tjaden, Rini Mukherjee Saxena, et al. · Nucleic Acids Research · 199
Mutations in Interaction Surfaces Differentially Impact E. coli Hfq Association with Small RNAs and Their mRNA Targets
2013 · Aixia Zhang, Daniel J. Schu, et al. · Journal of Molecular Biology · 153
Probing the sRNA regulatory landscape of P. aeruginosa : post‐transcriptional control of determinants of pathogenicity and antibiotic susceptibility
2017 · Yi‐Fan Zhang, Kook Han, et al. · Molecular Microbiology · 121
PDF
A Novel Fur- and Iron-Regulated Small RNA, NrrF, Is Required for Indirect Fur-Mediated Regulation of the sdhA and sdhC Genes in Neisseria meningitidis
2007 · J. R. Mellin, Sulip Goswami, et al. · Journal of Bacteriology · 117
GRIL-seq provides a method for identifying direct targets of bacterial small regulatory RNA by in vivo proximity ligation
2016 · Kook Han, Brian Tjaden, et al. · Nature Microbiology · 112
A computational system for identifying operons based on RNA-seq data
2019 · Brian Tjaden · Methods · 96
PDF
Small RNA profiling in Mycobacterium tuberculosis identifies MrsI as necessary for an anticipatory iron sparing response
2018 · Elias R. Gerrick, Thibault Barbier, et al. · Proceedings of the National Academy of Sciences · 79
PDF
Small non-coding RNAs in Streptomyces coelicolor
2008 · Julia P. Swiercz, Hindra, et al. · Nucleic Acids Research · 76
PDF
Initial Proteome Analysis of Model MicroorganismHaemophilus influenzaeStrain Rd KW20
2003 · Eugene Kolker, Samuel Purvine, et al. · Journal of Bacteriology · 68
The Gonococcal Transcriptome during Infection of the Lower Genital Tract in Women
2015 · Ryan McClure, Kathleen Nudel, et al. · PLoS ONE · 65
PDF
Identifying operons and untranslated regions of transcripts using Escherichia coli RNA expression analysis
2002 · Brian Tjaden, David R. Haynor, et al. · Bioinformatics · 46
Assessing computational tools for the discovery of small RNA genes in bacteria
2011 · Xiaojun Lu, Heidi Goodrich-Blair, et al. · RNA · 45
PDF
An approach for clustering gene expression data with error information
2006 · Brian Tjaden · BMC Bioinformatics · 43
PDF
Transcriptome Analysis of Neisseria gonorrhoeae during Natural Infection Reveals Differential Expression of Antibiotic Resistance Determinants between Men and Women
2018 · Kathleen Nudel, Ryan McClure, et al. · mSphere · 35
Identification of sRNAs expressed by the human pathogen Neisseria gonorrhoeae under disparate growth conditions
2014 · Ryan McClure, Brian Tjaden, et al. · Frontiers in Microbiology · 33
PDF
TargetRNA3: predicting prokaryotic RNA regulatory targets with machine learning
2023 · Brian Tjaden · Genome biology · 30
PDF
Prediction of small, noncoding RNAs in bacteria using heterogeneous data
2007 · Brian Tjaden · Journal of Mathematical Biology · 27
Bioinformatic prediction and experimental verification of sRNAs in the haloarchaeonHaloferax volcanii
2011 · Julia Babski, Brian Tjaden, et al. · RNA Biology · 26
PDF
Small RNAs of the halophilic archaeon Haloferax volcanii
2009 · Jörg Soppa, Julia Straub, et al. · Biochemical Society Transactions · 25
Identification and Characterization of Serotype-Specific Variation in Group A Streptococcus Pilus Expression
2017 · Gregory Calfee, Jessica L. Danger, et al. · Infection and Immunity · 24
Works count: 56
Citation count: 4,810
H-index: 24
I10-index: 27
Year
Topic
Type