Author

Elias Ventre

Observed names: Elias, VENTRE, Ventre, Elias

Institutions: Centre National de la Recherche Scientifique, Institut national de recherche en sciences et technologies du numérique, University of British Columbia, Inserm, Université Côte d'Azur, Aix-Marseille Université, Centre Inria d'Université Côte d'Azur, Centre de Recherche en Cancérologie de Marseille, Institut Paoli-Calmettes, COMPO: Méthodes computationnelles pour la prise en charge thérapeutique en oncologie

Observed institutions: Lyon 1 Université, École Normale Supérieure de Lyon, Centre National de la Recherche Scientifique, Institut national de recherche en sciences et technologies du numérique, University of British Columbia, Inserm, Université Côte d'Azur, Aix-Marseille Université, Laboratoire de Biologie et Modélisation de la Cellule, Centre Inria de l'Université Grenoble Alpes, Institut Camille Jordan, Centre Inria d'Université Côte d'Azur, Centre de Recherche en Cancérologie de Marseille, Institut Paoli-Calmettes, COMPO: Méthodes computationnelles pour la prise en charge thérapeutique en oncologie, University of British Columbia, Okanagan Campus

ORCID: 0000-0002-3863-2199

Observed ORCID: 0000-0002-3863-2199

OpenAlex ID: A5037722506

One model fits all: Combining inference and simulation of gene regulatory networks

2023 · Elias Ventre, Ulysse Herbach, et al. · PLoS Computational Biology · 41

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Reduction of a stochastic model of gene expression: Lagrangian dynamics gives access to basins of attraction as cell types and metastabilty

2021 · Elias Ventre, Thibault Espinasse, et al. · Journal of Mathematical Biology · 19

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Reverse engineering of a mechanistic model of gene expression using metastability and temporal dynamics

2021 · Elias Ventre · In Silico Biology · 19

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Trajectory inference for a branching SDE model of cell differentiation via lineage tracing

2026 · Elias Ventre, Aden Forrow, et al. · Journal of Mathematical Biology · 14

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Evidence for close molecular proximity between reverting and undifferentiated cells

2022 · Souad Zreika, Camille Fourneaux, et al. · BMC Biology · 14

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CardamomOT: A mechanistic optimal transport-based framework for gene regulatory network inference, trajectory reconstruction and generative modeling

2026 · Yann Maugé, Elias Ventre · PLoS Computational Biology · 4

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Convergence of the Sinkhorn algorithm when the Schrödinger problem has no solution

2025 · Aymeric Baradat, Elias Ventre · Annales de la faculté des sciences de Toulouse Mathématiques · 3

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Gene Program Explorer

2026 · Elias, VENTRE, Weizmann, Zeev · Zenodo (CERN European Organization for Nuclear Research) · 1

Cell trajectory inference based on schrödinger problem and a mechanistic model of stochastic gene expression

2026 · Clémence Fournié, Elias Ventre, et al. · npj Systems Biology and Applications · 1

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Calibrating stochastic models of gene expression from single-cell data: from gene selection to trajectory and network inference

2026 · Ventre, Elias · HAL AMU

GSET: Gene Signals from Embedding Trajectories select compact contexts for mechanistic GRN inference

2026 · Zeev Weizmann, Elias Ventre · bioRxiv (Cold Spring Harbor Laboratory)

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Global StationaryOT: trajectory inference for aging time courses of single-cell snapshots

2026 · Cole Boyle, Elias Ventre, et al. · Bioinformatics

Benchmarking of the robustness of mechanistic generative models in cellular trajectory and gene regulatory network joint inference

2025 · Maugé, Yann, Ventre, Elias · HAL

CARDAMOM files

2025 · Elias Ventre, Olivier Gandrillon · OSF Preprints (OSF Preprints)

Analysis, calibration and evaluation of stochastic models of gene expression

2022 · Elias Ventre · theses.fr (ABES)

CARDAMOM: Cell type Analysis from scRna-seq Data Achieved from a Mixture MOdel

2022 · Ventre, Elias, Herbach, Ulysse, et al. · HAL

Works count: 18

Citation count: 116

H-index: 5

I10-index: 5