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Davide Maspero

Integration of single-cell RNA-seq data into population models to characterize cancer metabolism
2019 · Chiara Damiani, Davide Maspero, et al. · PLoS Computational Biology · 122
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Mutational signatures and heterogeneous host response revealed via large-scale characterization of SARS-CoV-2 genomic diversity
2021 · Alex Graudenzi, Davide Maspero, et al. · iScience · 76
A review of computational strategies for denoising and imputation of single-cell transcriptomic data
2020 · Lucrezia Patruno, Davide Maspero, et al. · Briefings in Bioinformatics · 62
Large-scale analysis of SARS-CoV-2 synonymous mutations reveals the adaptation to the human codon usage during the virus evolution
2022 · Daniele Ramazzotti, Fabrizio Angaroni, et al. · Virus Evolution · 51
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LACE: Inference of cancer evolution models from longitudinal single-cell sequencing data
2021 · Daniele Ramazzotti, Fabrizio Angaroni, et al. · Journal of Computational Science · 34
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An Optimal Control Framework for the Automated Design of Personalized Cancer Treatments
2020 · Fabrizio Angaroni, Alex Graudenzi, et al. · Frontiers in Bioengineering and Biotechnology · 33
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Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power
2018 · Alex Graudenzi, Davide Maspero, et al. · Journal of Biomedical Informatics · 32
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popFBA: tackling intratumour heterogeneity with Flux Balance Analysis
2017 · Chiara Damiani, Marzia Di Filippo, et al. · Bioinformatics · 32
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Single-cell Digital Twins for Cancer Preclinical Investigation
2019 · Marzia Di Filippo, Chiara Damiani, et al. · Methods in molecular biology · 30
Cigarette smoke alters the transcriptome of non-involved lung tissue in lung adenocarcinoma patients
2019 · Giulia Pintarelli, Sara Noci, et al. · Scientific Reports · 30
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VERSO: A comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples
2021 · Daniele Ramazzotti, Fabrizio Angaroni, et al. · Patterns · 29
Interpretable inflammation landscape of circulating immune cells
2026 · Laura Jiménez-Gracia, Davide Maspero, et al. · Nature Medicine · 26
Chemotherapy after PD ‐1 inhibitors in relapsed/refractory Hodgkin lymphoma: Outcomes and clonal evolution dynamics
2022 · Eleonora Calabretta, Anna Guidetti, et al. · British Journal of Haematology · 23
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VERSO: a comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples
2020 · Daniele Ramazzotti, Fabrizio Angaroni, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 12
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MaREA4Galaxy: Metabolic reaction enrichment analysis and visualization of RNA-seq data within Galaxy
2020 · Chiara Damiani, Lorenzo Rovida, et al. · Computational and Structural Biotechnology Journal · 12
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Variant calling from scRNA-seq data allows the assessment of cellular identity in patient-derived cell lines
2022 · Daniele Ramazzotti, Fabrizio Angaroni, et al. · Nature Communications · 11
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Modeling Spatio-Temporal Dynamics of Metabolic Networks with Cellular Automata and Constraint-Based Methods
2018 · Alex Graudenzi, Davide Maspero, et al. · Lecture notes in computer science · 8
LACE 2.0: an interactive R tool for the inference and visualization of longitudinal cancer evolution
2023 · Gianluca Ascolani, Fabrizio Angaroni, et al. · BMC Bioinformatics · 7
Spatiotemporal T-cell tracking for personalized T-cell receptor T-cell therapy designs in childhood cancer
2025 · I. Sentís, J.L. Melero, et al. · Annals of Oncology · 6
Combining multi-target regression deep neural networks and kinetic modeling to predict relative fluxes in reaction systems
2021 · Lucrezia Patruno, Francesco Craighero, et al. · Information and Computation · 6
Read-through transcripts in lung: germline genetic regulation and correlation with the expression of other genes
2020 · Davide Maspero, Alice Dassano, et al. · Carcinogenesis · 6
Spatial FBA reveals heterogeneous Warburg niches in renal tumors and lactate consumption in colorectal cancer
2026 · Davide Maspero, Giovanni Marteletto, et al. · npj Systems Biology and Applications · 4
SparseSignatures: An R package using LASSO-regularized non-negative matrix factorization to identify mutational signatures from human tumor samples
2022 · Lorenzo Mella, Avantika Lal, et al. · STAR Protocols · 4
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Early detection and improved genomic surveillance of SARS-CoV-2 variants from deep sequencing data
2022 · Daniele Ramazzotti, Davide Maspero, et al. · iScience · 4
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On the Use of Topological Features of Metabolic Networks for the Classification of Cancer Samples
2021 · Jeaneth Machicao, Francesco Craighero, et al. · Current Genomics · 4
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Works count: 50
Citation count: 679
H-index: 13
I10-index: 16
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