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Nadine Töpfer

Metabolite Profiling and Integrative Modeling Reveal Metabolic Constraints for Carbon Partitioning under Nitrogen Starvation in the Green Algae Haematococcus pluvialis
2014 · Lee Recht, Nadine Töpfer, et al. · Journal of Biological Chemistry · 135
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The PhytoClust tool for metabolic gene clusters discovery in plant genomes
2017 · Nadine Töpfer, Lisa-Maria Fuchs, et al. · Nucleic Acids Research · 111
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Integration of metabolomics data into metabolic networks
2015 · Nadine Töpfer, Sabrina Kleessen, et al. · Frontiers in Plant Science · 98
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Advances in flux balance analysis by integrating machine learning and mechanism-based models
2021 · Ankur Sahu, Mary-Ann Blätke, et al. · Computational and Structural Biotechnology Journal · 83
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Label‐free deep shotgun proteomics reveals protein dynamics during tomato fruit tissues development
2017 · Jedrzej Szymanski, Yishai Levin, et al. · The Plant Journal · 81
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Alternative Crassulacean Acid Metabolism Modes Provide Environment-Specific Water-Saving Benefits in a Leaf Metabolic Model
2020 · Nadine Töpfer, Thomas Braam, et al. · The Plant Cell · 80
Integration of Genome-Scale Modeling and Transcript Profiling Reveals Metabolic Pathways Underlying Light and Temperature Acclimation in Arabidopsis
2013 · Nadine Töpfer, Camila Caldana, et al. · The Plant Cell · 50
iReMet-flux: constraint-based approach for integrating relative metabolite levels into a stoichiometric metabolic models
2016 · Max Sajitz-Hermstein, Nadine Töpfer, et al. · Bioinformatics · 31
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Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli
2012 · Nadine Töpfer, Szymon Jozefczuk, et al. · BMC Systems Biology · 25
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Variability of Metabolite Levels Is Linked to Differential Metabolic Pathways in Arabidopsis's Responses to Abiotic Stresses
2014 · Nadine Töpfer, Federico Scossa, et al. · PLoS Computational Biology · 23
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Metabolic modeling reveals distinct roles of sugars and carboxylic acids in stomatal opening as well as unexpected carbon fluxes
2024 · Noah Sprent, C Y Maurice Cheung, et al. · The Plant Cell · 15
Environment-coupled models of leaf metabolism
2021 · Nadine Töpfer · Biochemical Society Transactions · 15
In silico encounters: harnessing metabolic modelling to understand plant–microbe interactions
2025 · Martina Feierabend, Nadine Töpfer · FEMS Microbiology Reviews · 14
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Integration of Plant Metabolomics Data with Metabolic Networks: Progresses and Challenges
2018 · Nadine Töpfer, Samuel M. D. Seaver, et al. · Methods in molecular biology · 12
CobraMod: a pathway-centric curation tool for constraint-based metabolic models
2022 · Stefano Camborda, Jan-Niklas Weder, et al. · Bioinformatics · 11
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Metabolic modelling: Insights into the machine room of plant metabolism
2025 · Tiago M. Machado, Nadine Töpfer, et al. · Journal of Plant Physiology · 7
Proteome reorganization and amino acid metabolism during germination and seedling establishment in Lupinus albus
2024 · Cecile Angermann, Björn Heinemann, et al. · Journal of Experimental Botany · 7
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Large-scale modeling provides insights intoArabidopsis's acclimation to changing light and temperature conditions
2013 · Nadine Töpfer, Zoran Niokoloski · Plant Signaling & Behavior · 6
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panomiX: Investigating mechanisms of trait emergence through multi-omics data integration
2025 · Ankur Sahu, Dennis Psaroudakis, et al. · Plant Phenomics · 5
Ustilago maydis infection reshapes the maize phyllosphere microbiome through antimicrobial effectors and host metabolic reprogramming
2026 · Zarah Sorger, Sarah Daher, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 1
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panomiX: Investigating Mechanisms Of Trait Emergence Through Multi-Omics Data Integration
2025 · Ankur Sahu, Dennis Psaroudakis, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 1
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Accessing Enzyme Kinetic Data and Prediction Methods at Scale
2026 · Saleh Alwer, Hugues Escoffier, et al. · bioRxiv (Cold Spring Harbor Laboratory)
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Modelling Cocoa-Phytophthora megakarya metabolic interaction to weaken Plant-Pathogen compatible relationship
2026 · Nembot Fomba, Christian Gaele, Töpfer, Nadine · Zenodo (CERN European Organization for Nuclear Research)
Enzyme kcat predictions and inter-method agreement analysis for the Escherichia coli iML1515 metabolic model
2026 · Alwer, Saleh, Escoffier, Hugues, et al. · Zenodo (CERN European Organization for Nuclear Research)
OpenKinetics Predictor: a unified interface for enzyme kinetic parameter prediction
2026 · Alwer, Saleh, Egwu, Chidi, et al. · Zenodo (CERN European Organization for Nuclear Research)
Works count: 32
Citation count: 811
H-index: 13
I10-index: 15
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