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Author

Seppe De Winter

Observed name: De Winter, Seppe
ORCID: 0000-0001-7907-1247
Observed ORCID: 0000-0001-7907-1247
OpenAlex ID: A5039340595
SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks
2023 · Carmen Bravo González-Blas, Seppe De Winter, et al. · Nature Methods · 782
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Cell type diversity in a developing octopus brain
2022 · Ruth Styfhals, Grygoriy Zolotarov, et al. · Nature Communications · 76
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Shared enhancer gene regulatory networks between wound and oncogenic programs
2023 · Swann Floc'hlay, Ramya Balaji, et al. · eLife · 28
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CREsted: modeling genomic and synthetic cell-type-specific enhancers across tissues and species
2026 · Niklas Kempynck, Seppe De Winter, et al. · Nature Methods · 27
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Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex
2025 · Nelson J. Johansen, Niklas Kempynck, et al. · Cell Genomics · 20
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Modelling and design of transcriptional enhancers
2025 · Seppe De Winter, Vasileios Konstantakos, et al. · Nature Reviews Bioengineering · 20
Cross-species cellular mapping and humanization of Fcγ receptors to advance antibody modeling
2026 · Karel F. A. Van Damme, Dorine Sichien, et al. · Science Immunology · 8
System-wide extraction of cis-regulatory rules from sequence-to-function models in human neural development
2026 · Seppe De Winter, Camiel Mannens, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 5
Evolutionary transfer learning enables organism-wide inference of mammalian enhancer landscapes
2026 · Chengxiang Qiu, Riza M. Daza, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 3
Zebrafish enhancer reporter assay of SHH floor plate enhancer 1
2026 · De Winter, Seppe, Spanier, Katina I · Zenodo (CERN European Organization for Nuclear Research)
DeepSCENIC: transfer learning from sequence-to-function models enables causal gene regulatory network inference
2026 · Gabriele Partel, Seppe De Winter, et al. · bioRxiv (Cold Spring Harbor Laboratory)
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TF-MINDI tutorial data
2026 · De Winter, Seppe, Mahieu, Lukas, et al. · Zenodo (CERN European Organization for Nuclear Research)
Enhancer reporter assays of synthetic somatic muscle, cardiac muscle and endothelial enhancers in zebrafish.
2025 · Seppe De Winter, Valérie Bercier, et al.
Cross-species cellular mapping and humanization of Fc. receptors to advance antibody modeling
2025 · Van Damme, Karel, Sichien, Dorine, et al. · Ghent University Academic Bibliography (Ghent University)
aertslab/CREsted: 1.10.0
2024 · Cas Blaauw, Lukas Mahieu, et al. · Zenodo (CERN European Organization for Nuclear Research)
aertslab/CREsted: 1.1.0
2024 · Cas Blaauw, Lukas Mahieu, et al. · Zenodo (CERN European Organization for Nuclear Research)
aertslab/CREsted: 1.0.0
2024 · Cas Blaauw, Lukas Mahieu, et al. · Zenodo (CERN European Organization for Nuclear Research)
Author response: Shared enhancer gene regulatory networks between wound and oncogenic programs
2023 · Swann Floc'hlay, Ramya Balaji, et al. · eLife
Works count: 31
Citation count: 978
H-index: 7
I10-index: 6
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