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Shiquan Sun

Statistical analysis of spatial expression patterns for spatially resolved transcriptomic studies
2020 · Shiquan Sun, Jiaqiang Zhu, et al. · Nature Methods · 507
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SPARK-X: non-parametric modeling enables scalable and robust detection of spatial expression patterns for large spatial transcriptomic studies
2021 · Jiaqiang Zhu, Shiquan Sun, et al. · Genome biology · 265
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Accuracy, robustness and scalability of dimensionality reduction methods for single-cell RNA-seq analysis
2019 · Shiquan Sun, Jiaqiang Zhu, et al. · Genome biology · 241
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Delineating the dynamic evolution from preneoplasia to invasive lung adenocarcinoma by integrating single-cell RNA sequencing and spatial transcriptomics
2022 · Jianfei Zhu, Yue Fan, et al. · Experimental & Molecular Medicine · 227
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Unveiling inflammatory and prehypertrophic cell populations as key contributors to knee cartilage degeneration in osteoarthritis using multi-omics data integration
2024 · Yue Fan, Xuzhao Bian, et al. · Annals of the Rheumatic Diseases · 208
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Socioeconomic Deprivation Index Is Associated With Psychiatric Disorders: An Observational and Genome-wide Gene-by-Environment Interaction Analysis in the UK Biobank Cohort
2020 · Jing Ye, Yan Wen, et al. · Biological Psychiatry · 157
Testing and controlling for horizontal pleiotropy with probabilistic Mendelian randomization in transcriptome-wide association studies
2020 · Zhongshang Yuan, Huanhuan Zhu, et al. · Nature Communications · 134
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Collaborative filtering recommendation algorithm based on user preference derived from item domain features
2013 · Jing Zhang, Qinke Peng, et al. · Physica A Statistical Mechanics and its Applications · 91
Integrative differential expression and gene set enrichment analysis using summary statistics for scRNA-seq studies
2020 · Ying Ma, Shiquan Sun, et al. · Nature Communications · 83
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Differential expression analysis for RNAseq using Poisson mixed models
2017 · Shiquan Sun, Michelle Hood, et al. · Nucleic Acids Research · 76
Heritability estimation and differential analysis of count data with generalized linear mixed models in genomic sequencing studies
2018 · Shiquan Sun, Jiaqiang Zhu, et al. · Bioinformatics · 72
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A Kernel-Based Multivariate Feature Selection Method for Microarray Data Classification
2014 · Shiquan Sun, Qinke Peng, et al. · PLoS ONE · 64
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FSHB subunit gene is associated with major gene controlling litter size in commercial pig breeds
1998 · Yaofeng Zhao, Ning Li, et al. · Science in China Series C Life Sciences · 38
Deriving interval weights from an interval multiplicative consistent fuzzy preference relation
2011 · Jibin Lan, Mingming Hu, et al. · Knowledge-Based Systems · 35
Global feature selection from microarray data using Lagrange multipliers
2016 · Shiquan Sun, Qinke Peng, et al. · Knowledge-Based Systems · 29
An Efficient and Flexible Method for Deconvoluting Bulk RNA-Seq Data with Single-Cell RNA-Seq Data
2019 · Xifang Sun, Shiquan Sun, et al. · Cells · 25
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Ambient Air Pollution and Hospitalizations for Schizophrenia in China
2024 · Lijun Bai, Yunxing Jiang, et al. · JAMA Network Open · 24
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Powerful and accurate detection of temporal gene expression patterns from multi-sample multi-stage single-cell transcriptomics data with TDEseq
2024 · Yue Fan, Lei Li, et al. · Genome biology · 24
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The combined genotypes effect of ESR and FSHβ genes on litter size traits in five different pig breeds
2001 · Kefei Chen, Ning Li, et al. · Chinese Science Bulletin · 21
IMAGE: high-powered detection of genetic effects on DNA methylation using integrated methylation QTL mapping and allele-specific analysis
2019 · Yue Fan, Tauras P. Vilgalys, et al. · Genome biology · 20
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Recent advances in differential expression analysis for single-cell RNA-seq and spatially resolved transcriptomic studies
2023 · Xiya Guo, Jin Ning, et al. · Briefings in Functional Genomics · 19
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Genome-Wide Differentially Methylated Region Analysis to Reveal Epigenetic Differences of Articular Cartilage in Kashin–Beck Disease and Osteoarthritis
2021 · Yue Fan, Dalong Gao, et al. · Frontiers in Cell and Developmental Biology · 17
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A fast and efficient count-based matrix factorization method for detecting cell types from single-cell RNAseq data
2019 · Shiquan Sun, Yabo Chen, et al. · BMC Systems Biology · 16
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A hybrid PSO-GSA strategy for high-dimensional optimization and microarray data clustering
2014 · Shiquan Sun, Qinke Peng · IEEE International Conference on Information and Automation (ICIA) · 16
Higher-order partial least squares for predicting gene expression levels from chromatin states
2018 · Shiquan Sun, Xifang Sun, et al. · BMC Bioinformatics · 12
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Works count: 66
Citation count: 2,486
H-index: 20
I10-index: 25
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