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Jennifer M. Franks

Embryo-scale, single-cell spatial transcriptomics
2021 · Sanjay R. Srivatsan, Mary C. Regier, et al. · Science · 267
Abatacept in Early Diffuse Cutaneous Systemic Sclerosis: Results of a Phase II Investigator‐Initiated, Multicenter, Double‐Blind, Randomized, Placebo‐Controlled Trial
2019 · Dinesh Khanna, Cathie Spino, et al. · Arthritis & Rheumatology · 226
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Global skin gene expression analysis of early diffuse cutaneous systemic sclerosis shows a prominent innate and adaptive inflammatory profile
2019 · Brian Skaug, Dinesh Khanna, et al. · Annals of the Rheumatic Diseases · 179
Belimumab for the Treatment of Early Diffuse Systemic Sclerosis
2017 · Jessica K. Gordon, Viktor Martyanov, et al. · Arthritis & Rheumatology · 138
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Feature specific quantile normalization enables cross-platform classification of molecular subtypes using gene expression data
2018 · Jennifer M Franks, Guoshuai Cai, et al. · Bioinformatics · 100
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A Machine Learning Classifier for Assigning Individual Patients With Systemic Sclerosis to Intrinsic Molecular Subsets
2019 · Jennifer M. Franks, Viktor Martyanov, et al. · Arthritis & Rheumatology · 80
Mycophenolate Mofetil Treatment of Systemic Sclerosis Reduces Myeloid Cell Numbers and Attenuates the Inflammatory Gene Signature in Skin
2018 · Monique Hinchcliff, Diana M. Toledo, et al. · Journal of Investigative Dermatology · 68
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Machine learning predicts stem cell transplant response in severe scleroderma
2020 · Jennifer M Franks, Viktor Martyanov, et al. · Annals of the Rheumatic Diseases · 44
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Microbiome dysbiosis is associated with disease duration and increased inflammatory gene expression in systemic sclerosis skin
2019 · Michael E. Johnson, Jennifer M. Franks, et al. · Arthritis Research & Therapy · 37
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Pulmonary osteoclast-like cells in silica induced pulmonary fibrosis
2024 · Yoshihiro Hasegawa, Jennifer M. Franks, et al. · Science Advances · 35
Machine learning integration of scleroderma histology and gene expression identifies fibroblast polarisation as a hallmark of clinical severity and improvement
2020 · Kimberly Showalter, Robert Spiera, et al. · Annals of the Rheumatic Diseases · 33
BioMethyl: an R package for biological interpretation of DNA methylation data
2019 · Yue Wang, Jennifer M Franks, et al. · Bioinformatics · 26
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Single-cell analysis of chromatin and expression reveals age- and sex-associated alterations in the human heart
2024 · David F. Read, Gregory T. Booth, et al. · Communications Biology · 22
“I'm not going to be a guinea pig:” Medical mistrust as a barrier to male contraception for Black American men in Los Angeles, CA
2021 · Brian T Nguyen, Anthony L Brown, et al. · Contraception · 16
Machine-learning classification identifies patients with early systemic sclerosis as abatacept responders via CD28 pathway modulation
2022 · Bhaven K. Mehta, Monica E. Espinoza, et al. · JCI Insight · 11
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A genomic meta-analysis of clinical variables and their association with intrinsic molecular subsets in systemic sclerosis
2022 · Jennifer M Franks, Diana M Toledo, et al. · Lara D. Veeken · 11
Clinical and Molecular Findings After Autologous Stem Cell Transplantation or Cyclophosphamide for Scleroderma: Handling Missing Longitudinal Data
2021 · Lynette Keyes‐Elstein, Ashley Pinckney, et al. · Arthritis Care & Research · 11
A statistical framework for inferring genetic requirements from embryo-scale single-cell sequencing experiments
2025 · Madeleine Duran, Eliza Barkan, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 6
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Regulator combinations identify systemic sclerosis patients with more severe disease
2020 · Yue Wang, Jennifer M. Franks, et al. · JCI Insight · 6
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Thu0354 Machine Learning Classification of Skin Gene Expression Identifies a Subset of Systemic Sclerosis Patients Most Likely to Show Clinical Improvement in Response to Abatacept
2019 · Jennifer Franks, Bhaven Mehta, et al. · Annals of the Rheumatic Diseases · 2
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COVID-19 Vaccine Hesitancy in the California Central Valley: Why Are Pregnant Patients Saying “No”? [A201]
2022 · Jennifer M. Franks, Taide Chavez-Sturman, et al. · Obstetrics and Gynecology · 1
Insights Into Systemic Sclerosis from Gene Expression Profiling
2021 · Jennifer M. Franks, Michael L. Whitfield · Current Treatment Options in Rheumatology · 1
Coronary endothelial cells undergo venous-enriched disrupted maturation following myocardial infarction
2026 · Kaitlyn Ford, Hosanna Abbay, et al. · Basic Research in Cardiology
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Abstract Wed116: Disrupted Arterial-Venous Heterogeneity of the Coronary Microvascular Plexus in Post-Ischemic Myocardial Tissue
2026 · Kaitlyn Ford, Hosanna Abbay, et al. · Arteriosclerosis Thrombosis and Vascular Biology
Male Hormonal Contraceptive Safety: A Systematic Review of Adverse Events Across Investigational Methods [6A]
2019 · Jennifer M. Franks, Brian T. Nguyen, et al. · Obstetrics and Gynecology
Works count: 36
Citation count: 1,320
H-index: 14
I10-index: 17
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