Author

Sónia Carneiro

Observed names: Carneiro, Sonia, Carneiro, Sónia, S. Carneiro, Sonia Carneiro

Observed institutions: University of Auckland, Korea Advanced Institute of Science and Technology, SilicoLife (Portugal), Institute for Biotechnology and Bioengineering, Universidade do Minho Centro de Engenharia Biológica, University of Minho

ORCID: 0000-0001-8037-937X

Observed ORCID: 0000-0001-8037-937X

OpenAlex ID: A5054642116

The biological interpretation of metabolomic data can be misled by the extraction method used

2011 · Xavier Duportet, Raphael Bastos Mereschi Aggio, et al. · Metabolomics · 113

Metabolic responses to recombinant bioprocesses in Escherichia coli

2012 · Sónia Carneiro, Eugénio C. Ferreira, et al. · Journal of Biotechnology · 96

Metabolite secretion in microorganisms: the theory of metabolic overflow put to the test

2018 · Farhana R. Pinu, Ninna Granucci, et al. · Metabolomics · 88

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13C-based metabolic flux analysis

2012 · Rafael Carreira, Sónia Carneiro, et al. · Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT) · 41

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@Note: A workbench for Biomedical Text Mining

2009 · Anália Lourenço, Rafael Carreira, et al. · Journal of Biomedical Informatics · 41

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Metabolic footprint analysis of recombinant Escherichia coli strains during fed-batch fermentations

2010 · Sónia Carneiro, Silas G Villas-Bôas, et al. · Molecular BioSystems · 37

Reconstruction of a genome-scale metabolic model for Actinobacillus succinogenes 130Z

2018 · Bruno Pereira, Joana Miguel, et al. · BMC Systems Biology · 35

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BioDR: Semantic indexing networks for biomedical document retrieval

2009 · Anália Lourenço, Rafael Carreira, et al. · Expert Systems with Applications · 21

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Implementation of a Specific Rate Controller in a Fed-batch E. Coli Fermentation

2008 · I. Rocha, A.C.A. Veloso, et al. · IFAC Proceedings Volumes · 21

Assessment of physiological conditions in E. coli fermentations by epifluorescent microscopy and image analysis

2009 · Sónia Carneiro, António L. Amaral, et al. · Biotechnology Progress · 14

Stringent response of Escherichia coli: revisiting the bibliome using literature mining

2011 · Sónia Carneiro, Anália Lourenço, et al. · Microbial Informatics and Experimentation · 12

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Influence of the RelA Activity on E. coli Metabolism by Metabolite Profiling of Glucose-Limited Chemostat Cultures

2012 · Sónia Carneiro, Silas G. Villas-Bôas, et al. · Metabolites · 10

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A Study of the Short and Long-term Regulation of E. coli Metabolic Pathways

2011 · Anália Lourenço, Sónia Carneiro, et al. · Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics · 10

Yeast Metabolomics: Sample Preparation for a GC/MS-Based Analysis

2014 · Sónia Carneiro, Rui Pereira, et al. · Methods in molecular biology · 9

Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis

2008 · José P. Pinto, Oscar Dias, et al. · Advances in soft computing · 6

Semantic annotation of biological concepts interplaying microbial cellular responses

2011 · Rafael Carreira, Sónia Carneiro, et al. · BMC Bioinformatics · 5

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Challenges in integrating Escherichia coli molecular biology data

2010 · A. Lourenco, S. Carneiro, et al. · Briefings in Bioinformatics · 5

Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing

2009 · Anália Lourenço, Sónia Carneiro, et al. · Lecture notes in computer science · 5

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A Comparative Proteome Analysis of Escherichia coli ΔrelA Mutant Cells

2016 · Sónia Carneiro, Silas Villas-Bôas, et al. · Frontiers in Bioengineering and Biotechnology · 4

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Application of a genome-scale metabolic model to the inference of nutritional requirements and metabolic bottlenecks during recombinant protein production in Escherichia coli

2006 · Sónia Carneiro, Isabel Rocha, et al. · Microbial Cell Factories · 4

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A Systematic Modeling Approach to Elucidate the Triggering of the Stringent Response in Recombinant E. coli Systems

2011 · Sónia Carneiro, Eugénio C. Ferreira, et al. · Advances in intelligent and soft computing · 3

A new genome-scale metabolic model of oleaginous microalgae with refined lipid metabolism elucidates Microchloropsis gaditana mutant phenotypes.

2023 · Clemence Dupont-Thibert, Sylvaine Roy, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2

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Applying a Metabolic Footprinting Approach to Characterize the Impact of the Recombinant Protein Production in Escherichia coli

2010 · Sónia Carneiro, Silas G. Villas-Bôas, et al. · Advances in intelligent and soft computing · 2

Bringing Text Miners and Biologists Closer Together

2009 · Anália Lourenço, Sónia Carneiro, et al. · Nature Precedings · 2

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A tool for the automatic and manual annotation of biomedical documents

2008 · Anália Lourenço, Sónia Carneiro, et al. · 2

Works count: 68

Citation count: 594

H-index: 11

I10-index: 13