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Samuel D. Chorlton

Observed names: Chorlton, Samuel, Chorlton, Samuel D, Chorlton, Samuel D., Sam Chorlton, Samuel Chorlton, Samuel D Chorlton
ORCID: 0000-0001-9891-8546
Observed ORCIDs: 0000-0001-9891-8546, 0000-0002-7963-4756
OpenAlex ID: A5058688337
BugSeq: a highly accurate cloud platform for long-read metagenomic analyses
2021 · Jeremy Fan, Steven Huang, et al. · BMC Bioinformatics · 92
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Ten common issues with reference sequence databases and how to mitigate them
2024 · Samuel D. Chorlton · Frontiers in Bioinformatics · 87
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Agnostic Sequencing for Detection of Viral Pathogens
2023 · Nick P. G. Gauthier, Samuel D. Chorlton, et al. · Clinical Microbiology Reviews · 62
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COVID-19 in an immunocompromised host: persistent shedding of viable SARS-CoV-2 and emergence of multiple mutations: a case report
2021 · Wayne F. Leung, Samuel Chorlton, et al. · International Journal of Infectious Diseases · 61
Nanopore metagenomic sequencing for detection and characterization of SARS-CoV-2 in clinical samples
2021 · Nick P.G. Gauthier, Cassidy Nelson, et al. · PLoS ONE · 25
Next-generation sequencing for cytomegalovirus antiviral resistance genotyping in a clinical virology laboratory
2021 · Samuel D. Chorlton, Gordon Ritchie, et al. · Antiviral Research · 25
BugSplit enables genome-resolved metagenomics through highly accurate taxonomic binning of metagenomic assemblies
2022 · Induja Chandrakumar, Nick P. G. Gauthier, et al. · Communications Biology · 23
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Reanalysis of Alzheimer’s brain sequencing data reveals absence of purported HHV6A and HHV7
2020 · Samuel D. Chorlton · Journal of Bioinformatics and Computational Biology · 22
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Phenotypic and Genotypic Correlates of Penicillin Susceptibility in Nontoxigenic Corynebacterium diphtheriae, British Columbia, Canada, 2015–2018
2019 · Jason Zou, Samuel D. Chorlton, et al. · Emerging infectious diseases · 20
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Increased Severity of Multidrug-Resistant Shigella sonnei Infections in People Experiencing Homelessness
2024 · Aleksandra Stefanovic, Mosaab E Alam, et al. · Clinical Infectious Diseases · 16
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Validation of an Automated, End-to-End Metagenomic Sequencing Assay for Agnostic Detection of Respiratory Viruses
2024 · Nick P G Gauthier, Wilson Chan, et al. · The Journal of Infectious Diseases · 16
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Alterations in the nasopharyngeal microbiome associated with SARS-CoV-2 infection status and disease severity
2022 · Nick P.G. Gauthier, Kerstin Locher, et al. · PLoS ONE · 16
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Whole-Genome Sequencing of Corynebacterium diphtheriae Isolates Recovered from an Inner-City Population Demonstrates the Predominance of a Single Molecular Strain
2019 · Samuel D. Chorlton, Gordon Ritchie, et al. · Journal of Clinical Microbiology · 16
WGS of a cluster of MDR Shigella sonnei utilizing Oxford Nanopore R10.4.1 long-read sequencing
2023 · Gordon Ritchie, Samuel D Chorlton, et al. · Journal of Antimicrobial Chemotherapy · 13
BugSeq 16S: NanoCLUST with Improved Consensus Sequence Classification
2021 · Ana Jung, Samuel D Chorlton · bioRxiv (Cold Spring Harbor Laboratory) · 10
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Detecting healthcare-associated transmission and antifungal resistance in Candida auris via whole genome sequencing
2026 · Shannon G. Murphy, Tracy Ross, et al. · Journal of Clinical Microbiology · 8
refMLST: reference-based multilocus sequence typing enables universal bacterial typing
2024 · Mondher Khdhiri, Ella Thomas, et al. · BMC Bioinformatics · 8
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Logical Modeling and Analysis of Regulatory Genetic Networks in a Non Monotonic Framework
2015 · Nicolas Mobilia, Alexandre Rocca, et al. · Lecture notes in computer science · 8
No Isolate, No Problem: Using a Novel Insertion Sequence PCR to Link Rats to Human Shigellosis Cases in an Underserved Urban Community
2023 · Gordon Ritchie, Victor Leung, et al. · Microbiology Spectrum · 4
An Outbreak of Multidrug-Resistant Shigella flexneri Serotype 2a Among People Experiencing Homelessness in Vancouver
2025 · Victor Leung, Gordon Ritchie, et al. · Tropical Medicine and Infectious Disease · 3
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Automated Library Construction and Analysis for High-Throughput Nanopore Sequencing of SARS-CoV-2
2022 · Robin J N Coope, Nancy Matic, et al. · The Journal of Applied Laboratory Medicine · 3
Adjunctive bradyzoite-directed therapy for reducing complications of congenital toxoplasmosis
2019 · Samuel D. Chorlton · Medical Hypotheses · 3
Evaluating the accuracy of the MBT Lipid Xtract Kit for assessing colistin resistance in comparison to broth microdilution
2024 · Calvin Ka-Fung Lo, Gordon Ritchie, et al. · Journal of Medical Microbiology · 2
Detection of multiple human enteropathogens in Norway rats (Rattus norvegicus) from an under-resourced neighborhood of Vancouver, British Columbia
2023 · Lisa K. F. Lee, Chelsea G. Himsworth, et al. · PLoS neglected tropical diseases · 2
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Hypervirulent Klebsiella pneumoniae Infections in Vancouver, Canada: A Clinical, Microbiological, and Genetic Retrospective Investigation
2026 · Emma C L Finlayson-Trick, Aleksandra Stefanovic, et al. · Open Forum Infectious Diseases
Works count: 39
Citation count: 545
H-index: 13
I10-index: 15
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