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Brian Ondov
Observed names:
Brian D Ondov,
Brian D. Ondov,
Brian David Ondov,
Ondov, Brian,
Ondov, Brian D.,
Ondov, Brian David
show all 6
Institution:
Yale University
Observed institutions:
National Institutes of Health,
Georgia Institute of Technology,
Emory University,
United States National Library of Medicine,
Yale University,
National Human Genome Research Institute,
Georgia Tech Research Institute,
University of Maryland, College Park
show all 8
ORCID:
0000-0002-0740-1793
Observed ORCID:
0000-0002-0740-1793
OpenAlex ID:
A5061839283
Mash: fast genome and metagenome distance estimation using MinHash
2016
·
Brian D. Ondov
, Todd J. Treangen
, et al.
·
Genome biology
·
3,373
PDF
Interactive metagenomic visualization in a Web browser
2011
·
Brian D Ondov
, Nicholas H Bergman
, et al.
·
BMC Bioinformatics
·
2,152
PDF
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes
2014
·
Todd J Treangen
, Brian D Ondov
, et al.
·
Genome biology
·
1,663
PDF
Mash Screen: high-throughput sequence containment estimation for genome discovery
2019
·
Brian D Ondov
, Gabriel J Starrett
, et al.
·
Genome biology
·
323
PDF
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline
2013
·
Todd J Treangen
, Sergey Koren
, et al.
·
Genome biology
·
225
PDF
Structure and Complexity of a Bacterial Transcriptome
2009
·
Karla D. Passalacqua
, Anjana Varadarajan
, et al.
·
Journal of Bacteriology
·
221
Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications
2008
·
Brian D. Ondov
, Anjana Varadarajan
, et al.
·
Bioinformatics
·
94
PDF
Complete Genome Sequence of the Quality Control Strain Staphylococcus aureus subsp. aureus ATCC 25923
2014
·
Todd J. Treangen
, Rosslyn A. Maybank
, et al.
·
Genome Announcements
·
86
Face to Face: Evaluating Visual Comparison
2018
·
Brian Ondov
, Nicole Jardine
, et al.
·
IEEE Transactions on Visualization and Computer Graphics
·
70
The Perceptual Proxies of Visual Comparison
2019
·
Nicole Jardine
, Brian D. Ondov
, et al.
·
IEEE Transactions on Visualization and Computer Graphics
·
52
PDF
Psoralen Inactivation of Viruses: A Process for the Safe Manipulation of Viral Antigen and Nucleic Acid
2015
·
Katherine Schneider
, Loni Wronka-Edwards
, et al.
·
Viruses
·
37
PDF
A survey of automated methods for biomedical text simplification
2022
·
Brian Ondov
, Kush Attal
, et al.
·
Journal of the American Medical Informatics Association
·
35
PDF
BLAST-based validation of metagenomic sequence assignments
2018
·
Adam L. Bazinet
, Brian D. Ondov
, et al.
·
PeerJ
·
34
An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System
2010
·
Brian D. Ondov
, Charles Cochran
, et al.
·
Bioinformatics
·
26
PDF
Strand-Specific RNA-Seq Reveals Ordered Patterns of Sense and Antisense Transcription in Bacillus anthracis
2012
·
Karla D. Passalacqua
, Anjana Varadarajan
, et al.
·
PLoS ONE
·
23
PDF
Revealing Perceptual Proxies with Adversarial Examples
2020
·
Brian D. Ondov
, Fumeng Yang
, et al.
·
IEEE Transactions on Visualization and Computer Graphics
·
22
A dataset for plain language adaptation of biomedical abstracts
2023
·
Kush Attal
, Brian Ondov
, et al.
·
Scientific Data
·
20
PDF
Rapid Core-Genome Alignment and Visualization for Thousands of Intraspecific Microbial Genomes
2014
·
Todd J. Treangen
, Brian D. Ondov
, et al.
·
bioRxiv (Cold Spring Harbor Laboratory)
·
19
PDF
Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018
2018
·
Jacquelyn S. Meisel
, Daniel J. Nasko
, et al.
·
Microbiome
·
12
PDF
Krona: Interactive Metagenomic Visualization in a Web Browser
2015
·
Brian D. Ondov
, Nicholas H. Bergman
, et al.
·
Springer eBooks
·
12
Krona: Interactive Metagenomic Visualization in a Web Browser
2013
·
Brian D Ondov
, Nicholas H Bergman
, et al.
·
Springer eBooks
·
7
Genome Sequence of the Attenuated Carbosap Vaccine Strain of Bacillus anthracis
2013
·
Robin Harrington
, Brian D. Ondov
, et al.
·
Genome Announcements
·
6
TopicForest: embedding-driven hierarchical clustering and labeling for biomedical literature
2025
·
Chia-Hsuan Chang
, Brian Ondov
, et al.
·
Journal of Biomedical Informatics
·
4
Visualizing multilayer spatiotemporal epidemiological data with animated geocircles
2024
·
Brian Ondov
, Harsh B Patel
, et al.
·
Journal of the American Medical Informatics Association
·
2
PDF
SemNovel – A new approach to detecting semantic novelty of biomedical publications using embeddings of large language models
2025
·
Xueqing Peng
, Yutong Xie
, et al.
·
Journal of Biomedical Informatics
·
1
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Works count:
72
Citation count:
8,527
H-index:
18
I10-index:
20
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