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Matthieu Vignes

Gene Regulatory Network Reconstruction Using Bayesian Networks, the Dantzig Selector, the Lasso and Their Meta-Analysis
2011 · Matthieu Vignes, Jimmy Vandel, et al. · PLoS ONE · 102
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The dynamics of root meristem distribution in the soil
2009 · L. DUPUY, M. VIGNES, et al. · Plant Cell & Environment · 43
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Identifying Health Status in Grazing Dairy Cows from Milk Mid-Infrared Spectroscopy by Using Machine Learning Methods
2021 · Brenda Contla Hernández, Nicolas Lopez-Villalobos, et al. · Animals · 38
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A multi-objective genetic algorithm to find active modules in multiplex biological networks
2021 · Elva María Novoa-del-Toro, Efrén Mezura-Montes, et al. · PLoS Computational Biology · 26
Gene Clustering via Integrated Markov Models Combining Individual and Pairwise Features
2009 · M. Vignes, F. Forbes · IEEE Transactions on Computational Biology and Bioinformatics · 24
Exact or approximate inference in graphical models: why the choice is dictated by the treewidth, and how variable elimination can be exploited
2019 · N. Peyrard, M.‐J. Cros, et al. · Australian & New Zealand Journal of Statistics · 22
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Factors predicting parenting stress in the autism spectrum disorder context: A network analysis approach
2025 · Khan Buchwald, Daniel Shepherd, et al. · PLoS ONE · 21
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The African swine fever modelling challenge: Model comparison and lessons learnt
2022 · Pauline Ezanno, Sébastien Picault, et al. · Epidemics · 21
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Centrality statistics of symptom networks of schizophrenia: a systematic review
2024 · Khan Buchwald, Ajit Narayanan, et al. · Psychological Medicine · 18
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Gene Regulatory Networks: A Primer in Biological Processes and Statistical Modelling
2018 · Olivia Angelin-Bonnet, Patrick J. Biggs, et al. · Methods in molecular biology · 15
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Bridging physiological and evolutionary time‐scales in a gene regulatory network
2014 · Gwenaëlle Marchand, Vân Anh Huynh‐Thu, et al. · New Phytologist · 15
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Evaluation of protein intake and protein quality in New Zealand vegans
2025 · Bi Xue Patricia Soh, Matthieu Vignes, et al. · PLoS ONE · 14
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Using network analysis to identify factors influencing the heath-related quality of life of parents caring for an autistic child
2024 · Daniel Shepherd, Khan Buchwald, et al. · Research in Developmental Disabilities · 14
A novel Bayesian Latent Class Model (BLCM) evaluates multiple continuous and binary tests: A case study for Brucella abortus in dairy cattle
2024 · Yu Wang, Emilie Vallée, et al. · Preventive Veterinary Medicine · 11
Evaluation of the accuracy of the IDvet serological test for Mycoplasma bovis infection in cattle using latent class analysis of paired serum ELISA and quantitative real-time PCR on tonsillar swabs sampled at slaughter
2023 · Nelly Marquetoux, Matthieu Vignes, et al. · PLoS ONE · 11
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Investigating the genetic components of tuber bruising in a breeding population of tetraploid potatoes
2023 · Olivia Angelin-Bonnet, Susan Thomson, et al. · BMC Plant Biology · 11
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A Model-Based Approach to Gene Clustering with Missing Observation Reconstruction in a Markov Random Field Framework
2009 · Juliette Blanchet, Matthieu Vignes · Journal of Computational Biology · 11
An algorithm for the simulation of the growth of root systems on deformable domains
2012 · Lionel Xavier Dupuy, Matthieu Vignes · Journal of Theoretical Biology · 10
Inferring Networks from Multiple Samples with Consensus LASSO
2014 · Nathalie Villa-Vialaneix, Matthieu Vignes, et al. · Quality Technology & Quantitative Management · 9
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A Panel of Learning Methods for the Reconstruction of Gene Regulatory Networks in a Systems Genetics Context
2013 · David Allouche, Christine Cierco-Ayrolles, et al. · Springer eBooks · 8
MOTL: enhancing multi-omics matrix factorization with transfer learning
2025 · David P. Hirst, Morgane Térézol, et al. · Genome biology · 7
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Plasma and Synovial Fluid Cell-Free DNA Concentrations Following Induction of Osteoarthritis in Horses
2023 · Luca Panizzi, Keren E. Dittmer, et al. · Animals · 7
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Christophe Giraud. Introduction to High-Dimensional Statistics. Boca Raton, CRC Press
2018 · Katharina Parry, Matthieu Vignes · Biometrics · 7
Validation of low-cost air quality monitoring platforms using model-based control charts
2023 · Mikael Boulic, Robyn Phipps, et al. · Journal of Building Engineering · 6
sismonr: simulation of in silico multi-omic networks with adjustable ploidy and post-transcriptional regulation in R
2020 · Olivia Angelin-Bonnet, Patrick J Biggs, et al. · Bioinformatics · 6
Works count: 82
Citation count: 532
H-index: 13
I10-index: 18
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