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Author

Lucas Paoli

Observed names: L. Paoli, Paoli, Lucas, Paoli, Lucas (author), Paoli, Lucas Pierre Antoine
Observed institutions: SIB Swiss Institute of Bioinformatics, Centre National de la Recherche Scientifique, University of Alberta, Inserm, Institut Pasteur, Université Paris Cité, Institute for Work and Health, Université Paris Sciences et Lettres, École Normale Supérieure - PSL, ETH Zurich, Institut de Biologie de l'École Normale Supérieure, Department of Genomes & Genetics, Evolution et ingénierie de systèmes dynamiques, Institute of Microbiology, École Polytechnique Fédérale de Lausanne, Weizmann Institute of Science
ORCID: 0000-0003-0771-8309
Observed ORCID: 0000-0003-0771-8309
OpenAlex ID: A5065908879
Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
2019 · Guillem Salazar, Lucas Paoli, et al. · Cell · 466
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Microbial abundance, activity and population genomic profiling with mOTUs2
2019 · Alessio Milanese, Daniel R Mende, et al. · Nature Communications · 445
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Biosynthetic potential of the global ocean microbiome
2022 · Lucas Paoli, Hans-Joachim Ruscheweyh, et al. · Nature · 387
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Critical Assessment of Metagenome Interpretation: the second round of challenges
2022 · Fernando Meyer, Adrian Fritz, et al. · Nature Methods · 370
Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities
2021 · Silvia G. Acinas, Pablo Sánchez, et al. · Communications Biology · 244
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Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments
2022 · Hans-Joachim Ruscheweyh, Alessio Milanese, et al. · Microbiome · 130
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Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean
2021 · Marta Royo-Llonch, Pablo Sánchez, et al. · Nature Microbiology · 111
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metaSNV: A tool for metagenomic strain level analysis
2017 · Paul Igor Costea, Robin Munch, et al. · PLoS ONE · 109
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Functional and evolutionary significance of unknown genes from uncultivated taxa
2023 · Álvaro Rodríguez del Río, Joaquín Giner-Lamia, et al. · Nature · 102
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proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes
2019 · Daniel R Mende, Ivica Letunic, et al. · Nucleic Acids Research · 95
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Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes
2019 · Richard G. Dorrell, Tomonori Azuma, et al. · Proceedings of the National Academy of Sciences · 78
Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean
2023 · Corentin Hochart, Lucas Paoli, et al. · Nature Communications · 73
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The defensome of complex bacterial communities
2024 · Angelina Beavogui, Auriane Lacroix, et al. · Nature Communications · 71
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Antagonism as a foraging strategy in microbial communities
2025 · Astrid K.M. Stubbusch, François J. Peaudecerf, et al. · Science · 44
Critical Assessment of Metagenome Interpretation - the second round of challenges
2021 · F. Meyer, A. Fritz, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 42
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mOTUs: Profiling Taxonomic Composition, Transcriptional Activity and Strain Populations of Microbial Communities
2021 · Hans‐Joachim Ruscheweyh, Alessio Milanese, et al. · Current Protocols · 34
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Plastid Transcript Editing across Dinoflagellate Lineages Shows Lineage-Specific Application but Conserved Trends
2018 · Christen M Klinger, Lucas Paoli, et al. · Genome Biology and Evolution · 31
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Functional and evolutionary significance of unknown genes from uncultivated taxa
2022 · Álvaro Rodríguez del Río, Joaquín Giner-Lamia, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 25
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Phylogenetic Estimation of Community Composition and Novel Eukaryotic Lineages in Base Mine Lake: An Oil Sands Tailings Reclamation Site in Northern Alberta
2019 · Elisabeth Richardson, David Bass, et al. · Journal of Eukaryotic Microbiology · 25
metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes
2021 · Thea Van Rossum, Paul I Costea, et al. · Bioinformatics · 22
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Animal-associated marine Acidobacteria with a rich natural-product repertoire
2023 · Stefan Leopold-Messer, Clara Chepkirui, et al. · Chem · 19
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Uncharted biosynthetic potential of the ocean microbiome
2021 · Lucas Paoli, Hans-Joachim Ruscheweyh, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 17
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Conserved immunomodulation and variation in host association by Xanthomonadales commensals in Arabidopsis root microbiota
2025 · Jana Ordon, Elke Logemann, et al. · Nature Plants · 16
Ecogenomics of key prokaryotes in the arctic ocean
2020 · Marta Royo-Llonch, Pablo Sánchez, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 15
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Metagenome-assembled genomes reveal greatly expanded taxonomic and functional diversification of the abundant marine Roseobacter RCA cluster
2023 · Yanting Liu, Thorsten Brinkhoff, et al. · Microbiome · 14
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Works count: 88
Citation count: 3,041
H-index: 20
I10-index: 27
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