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Junlin Xu

Indicator Regularized Non-Negative Matrix Factorization Method-Based Drug Repurposing for COVID-19
2021 · Xianfang Tang, Lijun Cai, et al. · Frontiers in Immunology · 176
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CMF-Impute: an accurate imputation tool for single-cell RNA-seq data
2020 · Junlin Xu, Lijun Cai, et al. · Bioinformatics · 108
Graph embedding and Gaussian mixture variational autoencoder network for end-to-end analysis of single-cell RNA sequencing data
2023 · Junlin Xu, Jielin Xu, et al. · Cell Reports Methods · 104
Inferring Latent MicroRNA-Disease Associations on a Gene-Mediated Tripartite Heterogeneous Multiplexing Network
2022 · Wen Li, Shulin Wang, et al. · IEEE Transactions on Computational Biology and Bioinformatics · 104
Drug repositioning based on similarity constrained probabilistic matrix factorization: COVID-19 as a case study
2021 · Yajie Meng, Min Jin, et al. · Applied Soft Computing · 84
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Single-cell RNA-seq clustering: datasets, models, and algorithms
2020 · Lihong Peng, Xiongfei Tian, et al. · RNA Biology · 77
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Deep learning-based cell-specific gene regulatory networks inferred from single-cell multiome data
2025 · Junlin Xu, Changcheng Lu, et al. · Nucleic Acids Research · 56
Prioritizing antiviral drugs against SARS-CoV-2 by integrating viral complete genome sequences and drug chemical structures
2021 · Lihong Peng, Ling Shen, et al. · Scientific Reports · 50
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Evaluating the performance of dropout imputation and clustering methods for single-cell RNA sequencing data
2022 · Junlin Xu, Lingyu Cui, et al. · Computers in Biology and Medicine · 48
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BPLLDA: Predicting lncRNA-Disease Associations Based on Simple Paths With Limited Lengths in a Heterogeneous Network
2018 · Xiaofang Xiao, Wen Zhu, et al. · Frontiers in Genetics · 48
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CapsNet-LDA: predicting lncRNA-disease associations using attention mechanism and capsule network based on multi-view data
2022 · Zequn Zhang, Junlin Xu, et al. · Briefings in Bioinformatics · 45
Identifying Potential miRNAs–Disease Associations With Probability Matrix Factorization
2019 · Junlin Xu, Lijun Cai, et al. · Frontiers in Genetics · 43
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Gene Coexpression Network and Module Analysis across 52 Human Tissues
2020 · Binsheng He, Junlin Xu, et al. · BioMed Research International · 40
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A Robust Oversampling Approach for Class Imbalance Problem with Small Disjuncts
2022 · Yi Sun, Lijun Cai, et al. · IEEE Transactions on Knowledge and Data Engineering · 38
Dimensionality reduction and visualization of single-cell RNA-seq data with an improved deep variational autoencoder
2023 · Jing Jiang, Junlin Xu, et al. · Briefings in Bioinformatics · 33
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LRMCMDA: Predicting miRNA-Disease Association by Integrating Low-Rank Matrix Completion With miRNA and Disease Similarity Information
2020 · Junlin Xu, Wen Zhu, et al. · IEEE Access · 31
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A Streamlined scRNA-Seq Data Analysis Framework Based on Improved Sparse Subspace Clustering
2021 · Jujuan Zhuang, Lingyu Cui, et al. · IEEE Access · 30
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CAMIL: channel attention-based multiple instance learning for whole slide image classification
2025 · Jinyang Mao, Junlin Xu, et al. · Bioinformatics · 28
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CDPMF-DDA: contrastive deep probabilistic matrix factorization for drug-disease association prediction
2025 · Xianfang Tang, Yawen Hou, et al. · BMC Bioinformatics · 24
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CasPro-ESM2: Accurate identification of Cas proteins integrating pre-trained protein language model and multi-scale convolutional neural network
2025 · Chaorui Yan, Zilong Zhang, et al. · International Journal of Biological Macromolecules · 22
Drug repositioning based on tripartite cross-network embedding and graph convolutional network
2024 · Pan Zeng, Bofei Zhang, et al. · Expert Systems with Applications · 22
Computational drug repositioning using similarity constrained weight regularization matrix factorization: A case of COVID ‐19
2022 · Junlin Xu, Yajie Meng, et al. · Journal of Cellular and Molecular Medicine · 21
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Automatic collaborative learning for drug repositioning
2024 · Yi Wang, Yajie Meng, et al. · Engineering Applications of Artificial Intelligence · 20
PLPTP: A Motif-based Interpretable Deep Learning Framework Based on Protein Language Models for Peptide Toxicity Prediction
2025 · Shun Gao, Yanna Jia, et al. · Journal of Molecular Biology · 17
Inferring Latent Disease-lncRNA Associations by Faster Matrix Completion on a Heterogeneous Network
2019 · Wen Li, Shulin Wang, et al. · Frontiers in Genetics · 14
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Works count: 81
Citation count: 1,458
H-index: 21
I10-index: 29
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