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Simon Zhongyuan Tian

Observed names: Simon Zhongyuan Tian, Tian, Simon, Tian, Simon Zhongyuan, Zhongyuan (Simon) Tian, Zhongyuan Tian
ORCID: 0000-0003-2934-4088
Observed ORCID: 0000-0003-2934-4088
OpenAlex ID: A5066867952
CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
2015 · Zhonghui Tang, Oscar Junhong Luo, et al. · Cell · 950
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Multiplex chromatin interactions with single-molecule precision
2019 · Meizhen Zheng, Simon Zhongyuan Tian, et al. · Nature · 243
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Long-read ChIA-PET for base-pair-resolution mapping of haplotype-specific chromatin interactions
2017 · Xingwang Li, Oscar Junhong Luo, et al. · Nature Protocols · 128
Nuclear pore protein NUP210 depletion suppresses metastasis through heterochromatin-mediated disruption of tumor cell mechanical response
2021 · Ruhul Amin, Anjali Shukla, et al. · Nature Communications · 62
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Glycogen is the primary source of glucose during the lag phase of E. coli proliferation
2012 · Tomoaki Yamamotoya, Hitomi Dose, et al. · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics · 34
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Chromatin topology reorganization and transcription repression by PML-RARα in acute promyeloid leukemia
2020 · Ping Wang, Zhonghui Tang, et al. · Genome biology · 21
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Specific multivalent molecules boost CRISPR-mediated transcriptional activation
2024 · Rui Chen, Xinyao Shi, et al. · Nature Communications · 19
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Pore‐C simultaneously captures genome‐wide multi‐way chromatin interaction and associated DNA methylation status in Arabidopsis
2022 · Zhuowen Li, Yanping Long, et al. · Plant Biotechnology Journal · 18
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MIA-Sig: multiplex chromatin interaction analysis by signal processing and statistical algorithms
2019 · Minji Kim, Meizhen Zheng, et al. · Genome biology · 15
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Identification of key regulators in glycogen utilization in E. coli based on the simulations from a hybrid functional Petri net model
2013 · Zhongyuan Tian, Adrien Fauré, et al. · BMC Systems Biology · 15
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Landscape of the Epstein-Barr virus-host chromatin interactome and gene regulation
2025 · Simon Zhongyuan Tian, Yang Yang, et al. · The EMBO Journal · 10
ChIA-DropBox: a novel analysis and visualization pipeline for multiplex chromatin interactions
2019 · Simon Zhongyuan Tian, Daniel Capurso, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 8
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MCIBox: a toolkit for single-molecule multi-way chromatin interaction visualization and micro-domains identification
2022 · Simon Zhongyuan Tian, Guoliang Li, et al. · Briefings in Bioinformatics · 7
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3D chromatin structures associated with ncRNA roX2 for hyperactivation and coactivation across the entire X chromosome
2024 · Simon Zhongyuan Tian, Yang Yang, et al. · Science Advances · 6
MCI-frcnn: A deep learning method for topological micro-domain boundary detection
2022 · Simon Zhongyuan Tian, Pengfei Yin, et al. · Frontiers in Cell and Developmental Biology · 4
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ScSmOP: a universal computational pipeline for single-cell single-molecule multiomics data analysis
2023 · Kai Jing, Yewen Xu, et al. · Briefings in Bioinformatics · 1
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RNA-Associated Chromatin DNA-DNA Interaction Method
2026 · Tong Gao, Duo Ning, et al. · Journal of Visualized Experiments
TF-chRDP: a method for simultaneously capturing transcription factor binding chromatin-associated RNA, DNA and protein
2025 · Duo Ning, Yuqing Deng, et al. · Frontiers in Cell and Developmental Biology
Chromatin structure and gene transcription of recombinant p53 adenovirus vector within host
2025 · Duo Ning, Yuqing Deng, et al. · Frontiers in Molecular Biosciences
Tn5-Labeled DNA-FISH: An Optimized Probe Preparation Method for Probing Genome Architecture
2025 · Yang Yang, Gengzhan Chen, et al. · International Journal of Molecular Sciences
Additional file 4 of Chromatin topology reorganization and transcription repression by PML-RARα in acute promyeloid leukemia
2020 · Wang, Ping, Tang, Zhonghui, et al. · Figshare
Deciphering the effects of proximity ligation in chromatin contact maps to understand single molecule interactions data
2018 · Minji Kim, Meizhen Zheng, et al. · Research in Computational Molecular Biology
Intelligent mechanisms in E. coli in processing carbon sources
2014 · Zhongyuan Tian, Hiroshi Matsuno · Journal of Robotics Networking and Artificial Life
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Works count: 41
Citation count: 1,542
H-index: 10
I10-index: 11
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