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Chenjie Feng

Observed name: Chen-Jie Feng
ORCID: 0000-0001-7898-9291
Observed ORCID: 0000-0001-7898-9291
OpenAlex ID: A5068167694
trRosettaRNA: automated prediction of RNA 3D structure with transformer network
2023 · Wenkai Wang, Chenjie Feng, et al. · Nature Communications · 249
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Integrating end-to-end learning with deep geometrical potentials for ab initio RNA structure prediction
2023 · Yang Li, Chengxin Zhang, et al. · Nature Communications · 114
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Accurate Prediction of Protein Structural Flexibility by Deep Learning Integrating Intricate Atomic Structures and Cryo-EM Density Information
2024 · Xintao Song, Lei Bao, et al. · Nature Communications · 103
Predicting 3D structure and stability of RNA pseudoknots in monovalent and divalent ion solutions
2018 · Ya-Zhou Shi, Lei Jin, et al. · PLoS Computational Biology · 49
Modeling Structure, Stability, and Flexibility of Double-Stranded RNAs in Salt Solutions
2018 · Lei Jin, Ya-Zhou Shi, et al. · Biophysical Journal · 34
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What is the best reference state for building statistical potentials in RNA 3D structure evaluation?
2019 · Ya-Lan Tan, Chen-Jie Feng, et al. · RNA · 27
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DRfold2 is a deep learning-based tool that enables efficient and accurate RNA structure prediction
2026 · Yang Li, Chenjie Feng, et al. · PLoS Biology · 20
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Salt-Dependent RNA Pseudoknot Stability: Effect of Spatial Confinement
2021 · Chenjie Feng, Ya-Lan Tan, et al. · Frontiers in Molecular Biosciences · 14
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Accurate de novo prediction of RNA 3D structure with transformer network
2022 · Chenjie Feng, Wenkai Wang, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 13
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Statistical potentials for 3D structure evaluation: From proteins to RNAs*
2020 · Ya-Lan Tan, Chen-Jie Feng, et al. · Chinese Physics B · 12
Accurate global and local 3D alignment of cryo-EM density maps using local spatial structural features
2024 · Bintao He, Fa Zhang, et al. · Nature Communications · 10
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FP-Zernike: An Open-source Structural Database Construction Toolkit for Fast Structure Retrieval
2024 · Junhai Qi, Chenjie Feng, et al. · Genomics Proteomics & Bioinformatics · 5
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trRosettaRNA: automated prediction of RNA 3D structure with transformer network
2023 · Wenkai Wang, Chenjie Feng, et al. · RePEc: Research Papers in Economics · 4
Genetic homocysteine risk shapes cardiocerebral structure and multimorbidity through age- and sex-specific mechanisms: a UK Biobank study
2025 · Chenjie Feng, Yupeng Ma, et al. · Frontiers in Nutrition · 3
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vEMINR: Ultra‐Fast Isotropic Reconstruction for Volume Electron Microscopy With Implicit Neural Representation
2026 · Jibin Yang, Jie Huo, et al. · Advanced Science · 2
DeepRMSF: a deep learning-based automated approach for predicting atomic-level flexibility in RNA structure
2025 · Chenjie Feng, Xiaowen Sun, et al. · Briefings in Bioinformatics · 2
Robust projection parameter calibration in cryo-ET with L 1 -norm optimization
2025 · Shengkai Guo, Zihe Xu, et al. · Ultramicroscopy · 2
Benchmarking deep learning methods for C α atom prediction in cryo-EM density maps
2026 · Tian Zhang, Zhe Liu, et al. · Bioinformatics · 1
CryoAlign2: efficient global and local Cryo-EM map retrieval based on parallel-accelerated local spatial structural features
2025 · Zhe Liu, Bintao He, et al. · Bioinformatics · 1
Circulating Homocysteine and Choroid Plexus Volume Across the Alzheimer’s Disease Continuum: Cross-Sectional and Progression-Related Associations
2026 · Chenjie Feng, Tian Zhang, et al. · Biology
Optimized L1-norm smoothing gradient improves electron tomography’s tilt series alignment with both localized and virtual fiducial markers
2026 · Xinyan Li, Zihe Xu, et al. · Ultramicroscopy
ptmK: A computationally efficient toolkit for high-throughput lysine PTM modeling in proteins
2025 · Chenjie Feng, Peng Zhang, et al. · Biophysical Journal
PGAR-Zernike: an ultra-fast, accurate and fully open-source structure retrieval toolkit for convenient structural database construction
2023 · Junhai Qi, Chenjie Feng, et al. · bioRxiv (Cold Spring Harbor Laboratory)
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Works count: 23
Citation count: 665
H-index: 10
I10-index: 11
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