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Federico Agostini

DnaK Functions as a Central Hub in the E. coli Chaperone Network
2012 · Giulia Calloni, Taotao Chen, et al. · Cell Reports · 398
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Predicting protein associations with long noncoding RNAs
2011 · Matteo Bellucci, Federico Agostini, et al. · Nature Methods · 372
catRAPID omics: a web server for large-scale prediction of protein–RNA interactions
2013 · Federico Agostini, Andreas Zanzoni, et al. · Bioinformatics · 314
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Predicting protein associations with long noncoding RNAs
2011 · Matteo Bellucci, Federico Agostini, et al. · F1000Research · 239
RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions
2020 · Alessandro Bonetti, Federico Agostini, et al. · Nature Communications · 175
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Heteromeric RNP Assembly at LINEs Controls Lineage-Specific RNA Processing
2018 · Jan Attig, Federico Agostini, et al. · Cell · 173
Sequence-Based Prediction of Protein Solubility
2011 · Federico Agostini, Michele Vendruscolo, et al. · Journal of Molecular Biology · 115
cc SOL omics : a webserver for solubility prediction of endogenous and heterologous expression in Escherichia coli
2014 · Federico Agostini, Davide Cirillo, et al. · Bioinformatics · 112
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GPSeq reveals the radial organization of chromatin in the cell nucleus
2020 · Gabriele Girelli, Joaquin Custodio, et al. · Nature Biotechnology · 102
Recombination of repeat elements generates somatic complexity in human genomes
2022 · Giovanni Pascarella, Chung Chau Hon, et al. · Cell · 81
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Neurodegenerative diseases: Quantitative predictions of protein–RNA interactions
2012 · Davide Cirillo, Federico Agostini, et al. · RNA · 78
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iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture
2019 · Eleni Gelali, Gabriele Girelli, et al. · Nature Communications · 71
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Somatic Copy Number Alterations in Human Cancers: An Analysis of Publicly Available Data From The Cancer Genome Atlas
2021 · Luuk Harbers, Federico Agostini, et al. · Frontiers in Oncology · 67
Disulfide Bonds Reduce the Toxicity of the Amyloid Fibrils Formed by an Extracellular Protein
2011 · Maria F. Mossuto, Benedetta Bolognesi, et al. · Angewandte Chemie International Edition · 64
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The cleverSuite approach for protein characterization: predictions of structural properties, solubility, chaperone requirements and RNA-binding abilities
2014 · Petr Klus, Benedetta Bolognesi, et al. · Bioinformatics · 53
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Principles of self-organization in biological pathways: a hypothesis on the autogenous association of alpha-synuclein
2013 · Andreas Zanzoni, Domenica Marchese, et al. · Nucleic Acids Research · 53
X-inactivation: quantitative predictions of protein interactions in the Xist network
2012 · Federico Agostini, Davide Cirillo, et al. · Nucleic Acids Research · 50
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Genome-wide detection of DNA double-strand breaks by in-suspension BLISS
2020 · Britta A. M. Bouwman, Federico Agostini, et al. · Nature Protocols · 48
Molecular landscape of the interaction between the urease accessory proteins UreE and UreG
2014 · Anna Merloni, Olena Dobrovolska, et al. · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics · 43
Constitutive patterns of gene expression regulated by RNA-binding proteins
2014 · Davide Cirillo, Domenica Marchese, et al. · Genome biology · 39
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Intergenic RNA mainly derives from nascent transcripts of known genes
2021 · Agostini Federico, Zagalak Julian, et al. · Genome biology · 35
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Control of protein synthesis through mRNA pseudouridylation by dyskerin
2023 · Chiara Pederiva, Davide M. Trevisan, et al. · Science Advances · 33
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SeAMotE: a method for high-throughput motif discovery in nucleic acid sequences
2014 · Federico Agostini, Davide Cirillo, et al. · BMC Genomics · 31
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Predictions of protein–RNA interactions
2012 · Davide Cirillo, Federico Agostini, et al. · Wiley Interdisciplinary Reviews Computational Molecular Science · 27
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Comparative Genomics, Evolution, and Drought-Induced Expression of Dehydrin Genes in Model Brachypodium Grasses
2021 · M.A. Decena, S. Galvez-Rojas, et al. · Plants · 22
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Works count: 53
Citation count: 2,890
H-index: 24
I10-index: 29
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