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James M. Havrilla

Observed names: Havrilla, James, Havrilla, James M., Havrilla, James, M., James Havrilla, James M Havrilla, James Margolin Havrilla, Jim Havrilla, Jim M. Havrilla
ORCID: 0000-0002-8388-1362
Observed ORCID: 0000-0002-8388-1362
OpenAlex ID: A5071887502
A map of constrained coding regions in the human genome
2018 · James M. Havrilla, Brent S. Pedersen, et al. · Nature Genetics · 245
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Phen2Gene: rapid phenotype-driven gene prioritization for rare diseases
2020 · Mengge Zhao, James M Havrilla, et al. · NAR Genomics and Bioinformatics · 98
Coexpression patterns define epigenetic regulators associated with neurological dysfunction
2019 · Leandros Boukas, James M. Havrilla, et al. · Genome Research · 52
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SV-plaudit: A cloud-based framework for manually curating thousands of structural variants
2018 · Jonathan R Belyeu, Thomas J Nicholas, et al. · GigaScience · 45
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Natural language processing (NLP) tools in extracting biomedical concepts from research articles: a case study on autism spectrum disorder
2020 · Jacqueline Peng, Mengge Zhao, et al. · BMC Medical Informatics and Decision Making · 35
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Pooled Antibiotic Susceptibility Testing Performs Within CLSI Standards for Validation When Measured Against Broth Microdilution and Disk Diffusion Antibiotic Susceptibility Testing of Cultured Isolates
2024 · Emery Haley, Frank Cockerill, et al. · Antibiotics · 28
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Development of a phenotype ontology for autism spectrum disorder by natural language processing on electronic health records
2022 · Mengge Zhao, James Havrilla, et al. · Journal of Neurodevelopmental Disorders · 22
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OARD: Open annotations for rare diseases and their phenotypes based on real-world data
2022 · Cong Liu, Casey N. Ta, et al. · The American Journal of Human Genetics · 15
PheNominal: an EHR-integrated web application for structured deep phenotyping at the point of care
2022 · James M. Havrilla, Anbumalar Singaravelu, et al. · BMC Medical Informatics and Decision Making · 15
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Clinical Phenotypic Spectrum of 4095 Individuals with Down Syndrome from Text Mining of Electronic Health Records
2021 · James Margolin Havrilla, Mengge Zhao, et al. · Genes · 10
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PhenCards: a data resource linking human phenotype information to biomedical knowledge
2021 · James M. Havrilla, Cong Liu, et al. · Genome Medicine · 8
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Pooled Antibiotic Susceptibility Testing for Polymicrobial UTI Performs Within CLSI Validation Standards
2025 · Richard A. Festa, Frank R. Cockerill, et al. · Antibiotics · 6
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Full Validation of Pooled Antibiotic Susceptibility Testing Using CLSI Methods and Performance Criteria in UTI Pathogens
2025 · Richard A. Festa, Frank R. Cockerill, et al. · Antibiotics · 4
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Comparing Prescribing Behaviors and Clinician Experiences Between Multiplex PCR/Pooled Antibiotic Susceptibility Testing and Standard Urine Culture in Complicated UTI Cases
2024 · Emery Haley, Natalie Luke, et al. · Journal of Clinical Medicine · 3
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An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates
2021 · Ann M. Mc Cartney, Medhat Mahmoud, et al. · F1000Research · 3
Meta-analysis of protein structural alignment
2012 · Jim Havrilla, Ahmet Sacan · IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) · 3
PhenCards v.1.0.0 database
2021 · Havrilla, James, Liu, Cong, et al. · Zenodo (CERN European Organization for Nuclear Research) · 2
Noninferiority of Multiplex Polymerase Chain Reaction Compared to Standard Urine Culture for Urinary Tract Infection Diagnosis in Pediatric Patients at Hackensack Meridian Health Children’s Hospital Emergency Department
2024 · Sejal Bhavsar, Nisha Polavarapu, et al. · Pediatric Health Medicine and Therapeutics · 1
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Mp69-20 Uti Symptoms in "healthy" Adults
2024 · Faizanahmed I. Munshi, Sreeya Komaravolu, et al. · The Journal of Urology · 1
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Termviewer – A Web Application for Streamlined Human Phenotype Ontology (HPO) Tagging and Document Annotation
2022 · Anna Nixon, Li Fang, et al. · Chemistry & Biodiversity · 1
Ip48-14 Flipping a Coin: State-by-state Analysis Reveals Resistance Gene Detection Concordance With Phenotypic Antibiotic Susceptibility in Urinary Tract Infection Diagnostic Testing Averages 50 Percent
2026 · John Van Savage, Emery Haley, et al. · The Journal of Urology
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P-785. Pooled Antibiotic Susceptibility Testing (P-AST) Reveals High Prevalence of Multidrug- Resistance in Pediatric UTI Which Was Underreported by Standard Isolate Susceptibility Testing
2026 · Sejal M Bhavsar, Nisha Polavarapu, et al. · Open Forum Infectious Diseases
Additional file 2 of Development of a phenotype ontology for autism spectrum disorder by natural language processing on electronic health records
2022 · Zhao, Mengge, Havrilla, James, et al. · Figshare
Additional file 3 of Natural language processing (NLP) tools in extracting biomedical concepts from research articles: a case study on autism spectrum disorder
2020 · Peng, Jacqueline, Zhao, Mengge, et al. · Figshare
Pathoscore: a tool for unbiased evaluation of variant pathogenicity scores
2018 · Jim M. Havrilla, Brent S. Pedersen, et al.
Works count: 33
Citation count: 597
H-index: 10
I10-index: 10
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