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Author

Zülal Bingöl

Observed names: Bingol, Zulal, Bingöl, Zülal, Zulal Bingol
Institution: Bilkent University
ORCID: 0000-0002-2828-9665
Observed ORCID: 0000-0002-2828-9665
OpenAlex ID: A5076512151
GenASM: a high-performance, low-power approximate string matching acceleration framework for genome sequence analysis
2020 · Şenol-Çalı, D., Kalsi, G. S., et al. · Bilkent University Institutional Repository (Bilkent University) · 119
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Accelerating Genome Analysis: A Primer on an Ongoing Journey
2020 · Mohammed Alser, Zulal Bingol, et al. · IEEE Micro · 94
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SeGraM
2022 · Damla Senol Cali, Konstantinos Kanellopoulos, et al. · Proceedings - International Symposium on Computer Architecture/Proceedings · 38
GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis
2020 · Damla Senol Cali, Gurpreet S. Kalsi, et al. · Proceedings of the ... annual International Symposium on Microarchitecture/Proceedings of the annual International Symposium on Microarchitecture · 24
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GateKeeper-GPU: Fast and Accurate Pre-Alignment Filtering in Short Read Mapping
2021 · Zulal Bingol, Mohammed Alser, et al. · IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) · 13
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SeGraM: A Universal Hardware Accelerator for Genomic Sequence-to-Graph and Sequence-to-Sequence Mapping
2022 · Cali, Damla Senol, Kanellopoulos, Konstantinos, et al. · arXiv (Cornell University) · 11
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GateKeeper-GPU: Fast and Accurate Pre-Alignment Filtering in Short Read Mapping
2024 · Zülal Bingöl, Mohammed Alser, et al. · IEEE Transactions on Computers · 8
GateKeeper-GPU: Fast and Accurate Pre-Alignment Filtering in Short Read Mapping
2021 · Bingöl, Zülal, Alser, Mohammed, et al. · arXiv (Cornell University) · 5
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Revisiting Main Memory-Based Covert and Side Channel Attacks in the Context of Processing-in-Memory
2025 · F. Nisa Bostancı, Konstantinos Kanellopoulos, et al. · IEEE/IFIP International Conference on Dependable Systems and Networks (DSN) · 4
KENT: Fast Pathogen Screening with NVIDIA Jetson Cluster in Resource-Constrained Areas
2026 · Arda Icoz, Ricardo Roman-Brenes, et al. · bioRxiv (Cold Spring Harbor Laboratory)
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De Bruijn çizgelerinde pangenom analizlerini hızlandırma
2026 · Bingöl, Zülal · Bilkent University Institutional Repository (Bilkent University)
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De Bruijn graphs for pangenomics: in-depth performance benchmarking of de Bruijn graph-based tools for read mapping
2026 · Bingöl, Zülal, Şahin, Berkan, et al. · Zenodo (CERN European Organization for Nuclear Research)
PG2: algorithms and a web-based tool for effective layout and visual analysis of pangenome graphs
2026 · Görkem Kadir Solun, Ugur Dogrusoz, et al. · BMC Bioinformatics
De Bruijn graphs for pangenomics: in-depth performance benchmarking of de Bruijn graph-based tools for read mapping
2026 · Zülal Bingöl, Berkan Şahin, et al. · Briefings in Bioinformatics
POACHA: Partial Order Alignment Computation Hardware Acceleration
2026 · Zeynep Akcil, Berkan Şahin, et al.
LCPan: efficient variation graph construction using locally consistent parsing
2026 · Akmuhammet Ashyralyyev, Zülal Bingöl, et al. · Genome biology
Additional file 1 of LCPan: efficient variation graph construction using locally consistent parsing
2026 · Ashyralyyev, Akmuhammet, Bingöl, Zülal, et al. · Figshare
LCPan: efficient variation graph construction using Locally Consistent Parsing
2026 · Ashyralyyev, Akmuhammet, Bingöl, Zülal, et al. · Zenodo (CERN European Organization for Nuclear Research)
LCPan
2026 · Akmuhammet Ashyralyyev, Bingöl, Zülal, et al. · Zenodo (CERN European Organization for Nuclear Research)
LCPtools
2026 · Akmuhammet Ashyralyyev, Bingöl, Zülal, et al. · Zenodo (CERN European Organization for Nuclear Research)
FASTR: Reimagining FASTQ via Compact Image-inspired Representation
2026 · Adrian Tkachenko, Sepehr Salem, et al. · bioRxiv (Cold Spring Harbor Laboratory)
FASTR: Reimagining FASTQ via Compact Image-inspired Representation
2026 · Tkachenko, Adrian, Salem, Sepehr, et al. · arXiv (Cornell University)
FASTR: Reimagining FASTQ via Compact Image-inspired Representation
2026 · Tkachenko, Adrian, Salem, Sepehr, et al. · arXiv (Cornell University)
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Revisiting Main Memory-Based Covert and Side Channel Attacks in the Context of Processing-in-Memory
2024 · Bostanci, F. Nisa, Kanellopoulos, Konstantinos, et al. · arXiv (Cornell University)
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GateKeeper-GPU: accelerated pre-alignment filtering in short read mapping
2020 · Zülal Bingöl · Bilkent University Institutional Repository (Bilkent University)
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Works count: 27
Citation count: 296
H-index: 7
I10-index: 6
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