Get started
Author

Philip Stegmaier

Observed names: P Stegmaier, P. Stegmaier, Stegmaier, Philip
ORCID: 0000-0002-1881-8746
Observed ORCID: 0000-0002-1881-8746
OpenAlex ID: A5077363176
Explaining decisions of graph convolutional neural networks: patient-specific molecular subnetworks responsible for metastasis prediction in breast cancer
2021 · Hryhorii Chereda, Annalen Bleckmann, et al. · Genome Medicine · 124
PDF
“Upstream Analysis”: An Integrated Promoter-Pathway Analysis Approach to Causal Interpretation of Microarray Data
2015 · Jeannette Koschmann, Anirban Bhar, et al. · Microarrays · 67
PDF
Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm
2006 · T. Waleev, D. Shtokalo, et al. · Nucleic Acids Research · 58
PDF
Walking pathways with positive feedback loops reveal DNA methylation biomarkers of colorectal cancer
2019 · Alexander Kel, Ulyana Boyarskikh, et al. · BMC Bioinformatics · 56
PDF
Systematic DNA-binding domain classification of transcription factors.
2004 · Philip Stegmaier, Alexander E Kel, et al. · PubMed · 53
Signaling Pathways Potentially Responsible for Foam Cell Formation: Cholesterol Accumulation or Inflammatory Response—What is First?
2020 · Alexander N. Orekhov, Vasily N. Sukhorukov, et al. · International Journal of Molecular Sciences · 41
PDF
Multi-omics “upstream analysis” of regulatory genomic regions helps identifying targets against methotrexate resistance of colon cancer
2016 · Alexander E. Kel, Philip Stegmaier, et al. · EuPA Open Proteomics · 41
PDF
Role of Phagocytosis in the Pro-Inflammatory Response in LDL-Induced Foam Cell Formation; a Transcriptome Analysis
2020 · Alexander N. Orekhov, Nikita G. Nikiforov, et al. · International Journal of Molecular Sciences · 39
PDF
ExPlain™: finding upstream drug targets in disease gene regulatory networks
2008 · A. Kel, N. Voss, et al. · SAR and QSAR in environmental research · 34
Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies
2010 · Denitsa Alamanova, Philip Stegmaier, et al. · BMC Bioinformatics · 27
PDF
DNA Methylation and Gene Expression Profiling Reveal MFAP5 as a Regulatory Driver of Extracellular Matrix Remodeling in Varicose Vein Disease
2018 · Mariya A Smetanina, Alexander E Kel, et al. · Epigenomics · 26
Text mining-based word representations for biomedical data analysis and protein-protein interaction networks in machine learning tasks
2021 · Halima Alachram, Hryhorii Chereda, et al. · PLoS ONE · 24
PDF
Using systems medicine to identify a therapeutic agent with potential for repurposing in inflammatory bowel disease
2020 · Katie Lloyd, Stamatia Papoutsopoulou, et al. · Disease Models & Mechanisms · 19
PDF
3DTF: a web server for predicting transcription factor PWMs using 3D structure-based energy calculations
2012 · R. Gabdoulline, D. Eckweiler, et al. · Nucleic Acids Research · 19
PDF
Advanced Computational Biology Methods Identify Molecular Switches for Malignancy in an EGF Mouse Model of Liver Cancer
2011 · Philip Stegmaier, Nico Voss, et al. · PLoS ONE · 19
PDF
A Discriminative Approach for Unsupervised Clustering of DNA Sequence Motifs
2013 · Philip Stegmaier, Alexander Kel, et al. · PLoS Computational Biology · 16
PDF
Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3
2018 · Ulyana Boyarskikh, Sergey Pintus, et al. · BMC Medical Genomics · 14
PDF
Molecular mechanistic associations of human diseases
2010 · Philip Stegmaier, Mathias Krull, et al. · BMC Systems Biology · 13
PDF
Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
2007 · Simon Minovitsky, Philip Stegmaier, et al. · BMC Genomics · 9
PDF
geneXplainR: An R interface for the geneXplain platform
2017 · Philip Stegmaier, Alexander Kel, et al. · The Journal of Open Source Software · 5
PDF
OTU-001 Identification of a novel therapeutic agent for treating IBD guided by systems medicine
2018 · Michael Burkitt, Kate Lloyd, et al. · Gut · 1
PDF
External validation of ACCEPT (Acute COPD Exacerbation Prediction Tool) and predictive value of microbiome markers in the REDALERT study
2026 · Adrian Endres, Lauren Reinders, et al. · European Respiratory Journal
Self-sampling of throat swabs at home for respiratory tract microbiome analysis
2025 · Adrian Endres, Lauren Reinders, et al. · European Respiratory Journal
Additional file 2 of Explaining decisions of graph convolutional neural networks: patient-specific molecular subnetworks responsible for metastasis prediction in breast cancer
2021 · Hryhorii Chereda, Annalen Bleckmann, et al. · Figshare
Signaling pathways potentially responsible for foam cell formation: Cholesterol accumulation or inflammatory response - What is primary?
2020 · V.N. Sukhorukov, N.G. Nikiforov, et al. · Atherosclerosis
Works count: 50
Citation count: 705
H-index: 16
I10-index: 18
Year
Topic
Type