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Yu Sugihara

High-performance pipeline for MutMap and QTL-seq
2022 · Yu Sugihara, Lester Young, et al. · PeerJ · 99
Genome analyses reveal the hybrid origin of the staple crop white Guinea yam ( Dioscorea rotundata )
2020 · Yu Sugihara, Kwabena Darkwa, et al. · Proceedings of the National Academy of Sciences · 67
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Disentangling the complex gene interaction networks between rice and the blast fungus identifies a new pathogen effector
2023 · Yu Sugihara, Yoshiko Abe, et al. · PLoS Biology · 59
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A genetically linked pair of NLR immune receptors shows contrasting patterns of evolution
2022 · Motoki Shimizu, Akiko Hirabuchi, et al. · Proceedings of the National Academy of Sciences · 57
Activation of plant immunity through conversion of a helper NLR homodimer into a resistosome
2024 · Muniyandi Selvaraj, AmirAli Toghani, et al. · PLoS Biology · 49
Population Genomics of Yams: Evolution and Domestication of Dioscorea Species
2021 · Yu Sugihara, Aoi Kudoh, et al. · Population genomics · 29
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Binding of a pathogen effector to rice Exo70 proteins tethered to the NOI/RIN4 integrated domain of the NLR receptor Pii2 confers immunity against fungi
2017 · Koki Fujisaki, Yoshiko Abe, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 29
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Multiple Horizontal Mini-chromosome Transfers Drive Genome Evolution of Clonal Blast Fungus Lineages
2024 · Ana Cristina Barragan, Sergio M Latorre, et al. · Molecular Biology and Evolution · 22
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Rice apoplastic CBM1-interacting protein counters blast pathogen invasion by binding conserved carbohydrate binding module 1 motif of fungal proteins
2022 · Takumi Takeda, Machiko Takahashi, et al. · PLoS Pathogens · 22
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Helper NLR immune protein NRC3 evolved to evade inhibition by a cyst nematode virulence effector
2025 · Yu Sugihara, Jiorgos Kourelis, et al. · PLoS Genetics · 14
Can AI modeling of protein structures distinguish between sensor and helper NLR immune receptors?
2025 · AmirAli Toghani, Raoul Frijters, et al. · New Phytologist · 11
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NGS-based genome wide association study helps to develop co-dominant marker for the physical map-based locus of PFRU controlling flowering in cultivated octoploid strawberry
2022 · Sorachi Saiga, Maiko Tada, et al. · Euphytica · 9
Sat-BSA: an NGS-based method using local de novo assembly of long reads for rapid identification of genomic structural variations associated with agronomic traits
2021 · Tenta Segawa, Chisato Nishiyama, et al. · Ikushugaku zasshi · 9
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A hierarchical immune receptor network in lettuce reveals contrasting patterns of evolution in sensor and helper NLRs
2025 · Hsuan Pai, Toshiyuki Sakai, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 7
Functional divergence shaped the network architecture of plant immune receptors
2023 · Ching-Yi Huang, Yu-Seng Huang, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 7
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Subfunctionalization of NRC3 altered the genetic structure of the Nicotiana NRC network
2024 · Ching-Yi Huang, Yu-Seng Huang, et al. · PLoS Genetics · 6
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A genetically linked pair of NLR immune receptors show contrasting patterns of evolution
2021 · Motoki Shimizu, Akiko Hirabuchi, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 6
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Impact of rice GENERAL REGULATORY FACTOR14h (GF14h) on low-temperature seed germination and its application to breeding
2024 · Yusaku Sugimura, Kaori Oikawa, et al. · PLoS Genetics · 5
Can AI Modelling of Protein Structures Distinguish Between Sensor and Helper NLR Immune Receptors?
2024 · AmirAli Toghani, Raoul Frijters, et al. · Qeios · 4
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NLRome dataset from 124 genomes of plants in the Solanaceae family
2023 · Sugihara, Yu, Toghani, AmirAli, et al. · Spiral (Imperial College London) · 4
Whole genome sequencing of a wild yam species Dioscorea tokoro reveals a genomic region associated with sex
2022 · Satoshi Natsume, Hiroki Yaegashi, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 4
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AI-guided discovery of atypical protein assemblies
2026 · AmirAli Toghani, Benjamin A. Seager, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 3
Impact of rice GENERAL REGULATORY FACTOR14h ( GF14h ) on low-temperature seed germination and its application to breeding
2024 · Yusaku Sugimura, Kaori Oikawa, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 3
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Multiple horizontal mini-chromosome transfers drive genome evolution of clonal blast fungus lineages
2024 · A. Cristina Barragan, Sergio M. Latorre, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2
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Phylogenomic analysis in Latilactobacillus sakei by using polymorphisms detected by next-generation sequencing
2023 · Chisato NISHIYAMA, Suguru SEKIGUCHI, et al. · Bioscience of Microbiota Food and Health · 2
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Works count: 68
Citation count: 537
H-index: 11
I10-index: 11
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