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Jonathan Barenboim

The repertoire of mutational signatures in human cancer
2020 · Ludmil B. Alexandrov, Jaegil Kim, et al. · Nature · 3,478
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Pan-cancer analysis of whole genomes
2020 · Lauri A. Aaltonen, Federico Abascal, et al. · Nature · 3,059
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The evolutionary history of 2,658 cancers
2020 · Moritz Gerstung, Clemency Jolly, et al. · Nature · 1,049
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Patterns of somatic structural variation in human cancer genomes
2020 · Yilong Li, Nicola D. Roberts, et al. · Nature · 866
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Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing
2020 · Isidro Cortés-Ciriano, Jake June-Koo Lee, et al. · Nature Genetics · 712
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Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
2020 · Esther Rheinbay, Morten Muhlig Nielsen, et al. · Nature · 602
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Comprehensive molecular characterization of mitochondrial genomes in human cancers
2020 · Yuan Yuan, Young Seok Ju, et al. · Nature Genetics · 467
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Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition
2020 · Bernardo Rodriguez-Martin, Eva G. Alvarez, et al. · Nature Genetics · 450
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Genomic basis for RNA alterations in cancer
2020 · PCAWG Transcriptome Core Group, Claudia Calabrese, et al. · Nature · 398
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The landscape of viral associations in human cancers
2020 · Marc Zapatka, Ivan Borozan, et al. · Nature Genetics · 387
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Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer
2020 · Kadir C. Akdemir, Victoria T. Le, et al. · Nature Genetics · 283
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Integrative pathway enrichment analysis of multivariate omics data
2020 · Marta Paczkowska, Jonathan Barenboim, et al. · Nature Communications · 222
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A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns
2020 · Wei Jiao, Gurnit Atwal, et al. · Nature Communications · 217
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Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis
2020 · Joana Carlevaro-Fita, Andrés Lanzós, et al. · Communications Biology · 187
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Divergent mutational processes distinguish hypoxic and normoxic tumours
2020 · Vinayak Bhandari, Constance H. Li, et al. · Nature Communications · 143
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Genomic footprints of activated telomere maintenance mechanisms in cancer
2020 · Lina Sieverling, Chen Hong, et al. · Nature Communications · 132
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Sex differences in oncogenic mutational processes
2020 · Constance H. Li, Stephenie D. Prokopec, et al. · Nature Communications · 127
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Pathway and network analysis of more than 2500 whole cancer genomes
2020 · Matthew A. Reyna, David Haan, et al. · Nature Communications · 113
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High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations
2020 · Yiqun Zhang, Fengju Chen, et al. · Nature Communications · 77
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Combined burden and functional impact tests for cancer driver discovery using DriverPower
2020 · Shimin Shuai, PCAWG Drivers and Functional Interpretation Working Group, et al. · Nature Communications · 59
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Inferring structural variant cancer cell fraction
2020 · Marek Cmero, Ke Yuan, et al. · Nature Communications · 56
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Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples
2020 · Matthew H. Bailey, William U. Meyerson, et al. · Nature Communications · 52
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Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig
2020 · Yulia Rubanova, Ruian Shi, et al. · Nature Communications · 45
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Pathway and network analysis of more than 2,500 whole cancer genomes
2018 · Matthew A. Reyna, David Haan, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 20
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Author Correction: Pan-cancer analysis of whole genomes
2023 · Lauri A. Aaltonen, Federico Abascal, et al. · Nature · 15
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Works count: 77
Citation count: 14,260
H-index: 27
I10-index: 33
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