Author

Rui Cheng

Observed name: Cheng, Rui

Institution: Harbin Institute of Technology

Observed institution: Harbin Institute of Technology

ORCID: 0000-0002-9398-3514

Observed ORCID: 0000-0002-9398-3514

OpenAlex ID: A5080005655

DeepST: identifying spatial domains in spatial transcriptomics by deep learning

2022 · Chang Xu, Xiyun Jin, et al. · Nucleic Acids Research · 360

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Single-cell transcriptome and TCR profiling reveal activated and expanded T cell populations in Parkinson’s disease

2021 · Pingping Wang, Lifen Yao, et al. · Cell Discovery · 122

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Global Characterization of Peripheral B Cells in Parkinson’s Disease by Single-Cell RNA and BCR Sequencing

2022 · Pingping Wang, Meng Luo, et al. · Frontiers in Immunology · 67

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Global characterization of B cell receptor repertoire in COVID-19 patients by single-cell V(D)J sequencing

2021 · Xiyun Jin, Wenyang Zhou, et al. · Briefings in Bioinformatics · 47

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N439K Variant in Spike Protein Alter the Infection Efficiency and Antigenicity of SARS-CoV-2 Based on Molecular Dynamics Simulation

2021 · Wenyang Zhou, Chang Xu, et al. · Frontiers in Cell and Developmental Biology · 38

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A pan-cancer analysis of alternative splicing of splicing factors in 6904 patients

2021 · Rui Cheng, Lixing Xiao, et al. · Oncogene · 33

DeepCCI: a deep learning framework for identifying cell–cell interactions from single-cell RNA sequencing data

2023 · Wenyi Yang, Pingping Wang, et al. · Bioinformatics · 31

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Alternative splicing associated with cancer stemness in kidney renal clear cell carcinoma

2021 · Lixing Xiao, Guoying Zou, et al. · BMC Cancer · 28

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Identification of alternative splicing-derived cancer neoantigens for mRNA vaccine development

2021 · Rui Cheng, Zhaochun Xu, et al. · Briefings in Bioinformatics · 24

The Deep Learning Framework iCanTCR Enables Early Cancer Detection Using the T-cell Receptor Repertoire in Peripheral Blood

2024 · Yideng Cai, Meng Luo, et al. · Cancer Research · 21

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Single-cell transcriptomics reveals the interaction between peripheral CD4+ CTLs and mesencephalic endothelial cells mediated by IFNG in Parkinson's disease

2023 · Shi Yan, Yao Si, et al. · Computers in Biology and Medicine · 21

Charting the spatial transcriptome of the human cerebral cortex at single-cell resolution

2025 · Songren Wei, Meng Luo, et al. · Nature Communications · 20

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Regional transcriptional vulnerability to basal forebrain functional dysconnectivity in mild cognitive impairment patients

2022 · Peng Ren, Wencai Ding, et al. · Neurobiology of Disease · 13

Comprehensive analysis of partial methylation domains in colorectal cancer based on single-cell methylation profiles

2021 · Yan Huang, Pingping Wang, et al. · Briefings in Bioinformatics · 13

Functional requirement of alternative splicing in epithelial-mesenchymal transition of pancreatic circulating tumor

2024 · Lixing Xiao, Haoxiu Sun, et al. · Molecular Therapy — Nucleic Acids · 5

DeepCCI: a deep learning framework for identifying cell-cell interactions from single-cell RNA sequencing data

2022 · Wenyi Yang, Zhaochun Xu, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 4

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Structural dynamics of emergency networks: comparative analysis of earthquake and flood disasters

2025 · Rui Cheng, Zebin Zhao · Natural Hazards · 3

Core–Periphery Structures in Disaster Response Networks: A Longitudinal Analysis of the 2022 Luding Earthquake

2025 · Rui Cheng, Zebin Zhao · Journal of Disaster Research · 1

The Broker Roles in Conveying Emergency Information: An Investigation of the ‘7.20’ Henan Flood

2024 · Bo Zhang, Zebin Zhao, et al. · Lecture notes in networks and systems

Data from The Deep Learning Framework iCanTCR Enables Early Cancer Detection Using the T-cell Receptor Repertoire in Peripheral Blood