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Jonathan Romiguier

MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics
2020 · Rémi Allio, Alex Schomaker-Bastos, et al. · Molecular Ecology Resources · 1,971
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Comparative population genomics in animals uncovers the determinants of genetic diversity
2014 · J. Romiguier, P. Gayral, et al. · Nature · 659
Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence
2016 · Camille Roux, Christelle Fraïsse, et al. · PLoS Biology · 523
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Contrasting GC-content dynamics across 33 mammalian genomes: Relationship with life-history traits and chromosome sizes
2010 · Jonathan Romiguier, Vincent Ranwez, et al. · Genome Research · 224
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Less Is More in Mammalian Phylogenomics: AT-Rich Genes Minimize Tree Conflicts and Unravel the Root of Placental Mammals
2013 · Jonathan Romiguier, Vincent Ranwez, et al. · Molecular Biology and Evolution · 170
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Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion
2018 · Nicolas Galtier, Camille Roux, et al. · Molecular Biology and Evolution · 162
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Phylogenomics Controlling for Base Compositional Bias Reveals a Single Origin of Eusociality in Corbiculate Bees
2015 · Jonathan Romiguier, Sydney A. Cameron, et al. · Molecular Biology and Evolution · 116
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Extensive recent secondary contacts between four European white oak species
2017 · Thibault Leroy, Camille Roux, et al. · New Phytologist · 111
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Population genomics of eusocial insects: the costs of a vertebrate‐like effective population size
2014 · J. Romiguier, J. Lourenco, et al. · Journal of Evolutionary Biology · 108
Ant phylogenomics reveals a natural selection hotspot preceding the origin of complex eusociality
2022 · Jonathan Romiguier, Marek L. Borowiec, et al. · Current Biology · 102
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Biased Gene Conversion and GC-Content Evolution in the Coding Sequences of Reptiles and Vertebrates
2014 · Emeric Figuet, Marion Ballenghien, et al. · Genome Biology and Evolution · 102
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Analytical Biases Associated with GC-Content in Molecular Evolution
2017 · Jonathan Romiguier, Camille Roux · Frontiers in Genetics · 87
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OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals
2014 · E. J. P. Douzery, C. Scornavacca, et al. · Molecular Biology and Evolution · 86
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Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition
2014 · Claudia C Weber, Bastien Boussau, et al. · Genome biology · 85
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DILS: Demographic inferences with linked selection by using ABC
2021 · Christelle Fraïsse, Iva Popovic, et al. · Molecular Ecology Resources · 81
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Genomic Evidence for Large, Long-Lived Ancestors to Placental Mammals
2012 · J. Romiguier, V. Ranwez, et al. · Molecular Biology and Evolution · 68
K r /K c but not d N /d S correlates positively with body mass in birds, raising implications for inferring lineage-specific selection
2014 · Claudia C Weber, Benoit Nabholz, et al. · Genome biology · 66
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Fast and Robust Characterization of Time-Heterogeneous Sequence Evolutionary Processes Using Substitution Mapping
2012 · Jonathan Romiguier, Emeric Figuet, et al. · PLoS ONE · 66
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Efficient Selection of Branch-Specific Models of Sequence Evolution
2012 · Julien Y. Dutheil, Nicolas Galtier, et al. · Molecular Biology and Evolution · 66
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Relaxation of purifying selection suggests low effective population size in eusocial Hymenoptera and solitary pollinating bees
2021 · Jonathan Romiguier, Arthur Weyna · Peer Community Journal · 43
Convergent evolution of social hybridogenesis in Messor harvester ants
2016 · Jonathan Romiguier, Axel Fournier, et al. · Molecular Ecology · 35
Population genomics of the endangered giant Galápagos tortoise
2013 · Etienne Loire, Ylenia Chiari, et al. · Genome biology · 33
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Gene expression is more strongly influenced by age than caste in the ant Lasius niger
2017 · Eric R. Lucas, Jonathan Romiguier, et al. · Molecular Ecology · 28
Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum
2020 · Yacine Ben Chehida, Julie Thumloup, et al. · Scientific Reports · 26
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Mitochondrial DNA as a tool for reconstructing past life‐history traits in mammals
2014 · E. Figuet, J. Romiguier, et al. · Journal of Evolutionary Biology · 24
Works count: 89
Citation count: 5,227
H-index: 24
I10-index: 33
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