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Koen Deforche

Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
2022 · Raquel Viana, Sikhulile Moyo, et al. · Nature · 1,685
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An automated genotyping tool for enteroviruses and noroviruses
2011 · A. Kroneman, H. Vennema, et al. · Journal of Clinical Virology · 792
An automated genotyping system for analysis of HIV-1 and other microbial sequences
2005 · T. de Oliveira, K. Deforche, et al. · Computer applications in the biosciences · 498
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Genome Detective: an automated system for virus identification from high-throughput sequencing data
2018 · Michael Vilsker, Yumna Moosa, et al. · Bioinformatics · 429
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Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: Performance evaluation of the new REGA version 3 and seven other tools
2013 · Andrea-Clemencia Pineda-Peña, Nuno Rodrigues Faria, et al. · Infection Genetics and Evolution · 394
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Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
2022 · Raquel Viana, Sikhulile Moyo, et al. · Nature · 255
A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences
2009 · L. C. J. Alcantara, S. Cassol, et al. · Nucleic Acids Research · 193
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Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes
2020 · Sara Cleemput, Wim Dumon, et al. · Bioinformatics · 165
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A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes
2019 · Vagner Fonseca, Pieter J. K. Libin, et al. · PLoS neglected tropical diseases · 92
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Discordances between Interpretation Algorithms for Genotypic Resistance to Protease and Reverse Transcriptase Inhibitors of Human Immunodeficiency Virus Are Subtype Dependent
2006 · Joke Snoeck, Rami Kantor, et al. · Antimicrobial Agents and Chemotherapy · 88
Protease mutation M89I/V is linked to therapy failure in patients infected with the HIV-1 non-B subtypes C, F or G
2005 · Ana Barroso Abecasis, Koen Deforche, et al. · AIDS · 83
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APOBEC3G-Induced Hypermutation of Human Immunodeficiency Virus Type-1 Is Typically a Discrete “All or Nothing” Phenomenon
2012 · Andrew E. Armitage, Koen Deforche, et al. · PLoS Genetics · 82
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Analysis of HIV-1 pol sequences using Bayesian Networks: implications for drug resistance
2006 · K. Deforche, T. Silander, et al. · Bioinformatics · 72
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Investigation of Baseline Susceptibility to Protease Inhibitors in HIV-1 Subtypes C, F, G and Crf02_Ag
2006 · Ana B Abecasis, Koen Deforche, et al. · Antiviral Therapy · 69
VIRULIGN: fast codon-correct alignment and annotation of viral genomes
2018 · Pieter J K Libin, Koen Deforche, et al. · Bioinformatics · 63
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The incidence of multidrug and full class resistance in HIV-1 infected patients is decreasing over time (2001–2006) in Portugal
2008 · Jurgen Vercauteren, Koen Deforche, et al. · Retrovirology · 47
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SANTA-SIM: simulating viral sequence evolution dynamics under selection and recombination
2019 · Abbas Jariani, Christopher Warth, et al. · Virus Evolution · 36
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Prevalence and Epidemiology of HIV Type 1 Drug Resistance among Newly Diagnosed Therapy-Naive Patients in Belgium from 2003 to 2006
2008 · Jurgen Vercauteren, Inge Derdelinckx, et al. · AIDS Research and Human Retroviruses · 36
Estimation of an in vivo fitness landscape experienced by HIV-1 under drug selective pressure useful for prediction of drug resistance evolution during treatment
2007 · K. Deforche, R. Camacho, et al. · Bioinformatics · 33
Bayesian network analysis of resistance pathways against HIV-1 protease inhibitors
2006 · K. Deforche, R. Camacho, et al. · Infection Genetics and Evolution · 33
RegaDB: community-driven data management and analysis for infectious diseases
2013 · P. Libin, G. Beheydt, et al. · Bioinformatics · 32
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Estimating the Relative Contribution of dNTP Pool Imbalance and APOBEC3G/3F Editing to HIV Evolution In Vivo
2007 · Koen Deforche, Ricardo Camacho, et al. · Journal of Computational Biology · 31
Behavioral changes before lockdown and decreased retail and recreation mobility during lockdown contributed most to controlling COVID-19 in Western countries
2021 · Koen Deforche, Jurgen Vercauteren, et al. · BMC Public Health · 28
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An alignment method for nucleic acid sequences against annotated genomes
2017 · Koen Deforche · bioRxiv (Cold Spring Harbor Laboratory) · 27
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SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference
2004 · D. Paraskevis, K. Deforche, et al. · Bioinformatics · 26
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Works count: 98
Citation count: 5,542
H-index: 25
I10-index: 35
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