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Ching-Tai Chen

N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding
2019 · Thejkiran Pitti, Ching-Tai Chen, et al. · Scientific Reports · 69
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MS2CNN: predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks
2019 · Yang-Ming Lin, Ching-Tai Chen, et al. · BMC Genomics · 34
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Prediction of Carbohydrate Binding Sites on Protein Surfaces with 3-Dimensional Probability Density Distributions of Interacting Atoms
2012 · Keng-Chang Tsai, Jhih-Wei Jian, et al. · PLoS ONE · 29
Leveraging large language models for the deidentification and temporal normalization of sensitive health information in electronic health records
2025 · Hong-Jie Dai, Tatheer Hussain Mir, et al. · npj Digital Medicine · 22
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Unlocking the Secrets Behind Advanced Artificial Intelligence Language Models in Deidentifying Chinese-English Mixed Clinical Text: Development and Validation Study
2023 · You-Qian Lee, Ching-Tai Chen, et al. · Journal of Medical Internet Research · 20
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Calibr improves spectral library search for spectrum-centric analysis of data independent acquisition proteomics
2022 · Jen-Hung Wang, Wai-Kok Choong, et al. · Scientific Reports · 20
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Protease substrate site predictors derived from machine learning on multilevel substrate phage display data
2008 · Ching-Tai Chen, Ei-Wen Yang, et al. · Bioinformatics · 20
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Benchmarking Recording-Level Clinical Speech De-identification for Privacy-Preserving Clinical Audio
2026 · Hong-Jie Dai, Hang T.B. Le, et al. · medRxiv · 11
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WinProphet: A User-Friendly Pipeline Management System for Proteomics Data Analysis Based on Trans-Proteomic Pipeline
2019 · Ching-Tai Chen, Chu-Ling Ko, et al. · Analytical Chemistry · 7
Multi-Q 2 software facilitates isobaric labeling quantitation analysis with improved accuracy and coverage
2021 · Ching-Tai Chen, Jen-Hung Wang, et al. · Scientific Reports · 6
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ENCAP: Computational prediction of tumor T cell antigens with ensemble classifiers and diverse sequence features
2024 · Jen-Chieh Yu, Kuan Ni, et al. · PLoS ONE · 5
iHPDM: In Silico Human Proteome Digestion Map with Proteolytic Peptide Analysis and Graphical Visualizations
2019 · Wai-Kok Choong, Ching-Tai Chen, et al. · Journal of Proteome Research · 5
Hyplosp: a Knowledge-based Approach to Protein Local Structure Prediction
2006 · CHING-TAI CHEN, HSIN-NAN LIN, et al. · Journal of Bioinformatics and Computational Biology · 5
HEPAD: enhancing hemolytic peptide prediction with adaptive feature engineering and diverse sequence descriptors
2025 · Sih-Han Chen, Jen-Chieh Yu, et al. · BMC Bioinformatics · 4
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Improved prediction of anti-angiogenic peptides based on machine learning models and comprehensive features from peptide sequences
2024 · Yun-Chen Lee, Jen-Chieh Yu, et al. · Scientific Reports · 4
AAGP integrates physicochemical and compositional features for machine learning-based prediction of anti-aging peptides
2025 · Saptashwa Datta, Jen-Chieh Yu, et al. · Scientific Reports · 3
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Deidentification and Temporal Normalization of the Electronic Health Record Notes Using Large Language Models: The 2023 SREDH/AI-Cup Competition for Deidentification of Sensitive Health Information
2025 · Tatheer Hussain Mir, Hao-Ping Yang, et al. · Communications in computer and information science · 3
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A wandering Ozurdex in the anterior chamber
2023 · Ching-Tai Chen, Shih-Chun Chao, et al. · Taiwan Journal of Ophthalmology · 3
Large Language Models for Automatic Deidentification of Sensitive Health Information in Clinical Speech: 2025 International workshop on Deidentification of Electronic Medical Record Notes (2025 IW-DMRN), Taipei, Taiwan, August 10, 2025, Revised Selected Papers
2026 · Jitendra Jonnagaddala, Hong-Jie Dai, et al. · Communications in computer and information science · 2
iTop-Q: an Intelligent Tool for Top-down Proteomics Quantitation Using DYAMOND Algorithm
2017 · Hui-Yin Chang, Ching-Tai Chen, et al. · Analytical Chemistry · 2
Development of a clinical speech corpus with temporally aligned sensitive health information annotations
2026 · Hsieh-Chih Hsu, Liang-Chun Fang, et al. · BMJ Health & Care Informatics · 1
IQUP identifies quantitatively unreliable spectra with machine learning for isobaric labeling-based proteomics
2025 · Yi-Yun Chou, Jing-Chen Yang, et al. · Scientific Reports · 1
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Utilizing Large Language Models for Privacy Protection and Advancing Medical Digitization
2025 · Zhu-Jian Ru, Omkar Panchal, et al. · Communications in computer and information science · 1
Improving quantitation accuracy in isobaric-labeling mass spectrometry experiments with spectral library searching and feature-based peptide-spectrum match filter
2023 · Tzu-Yun Kuo, Jen-Hung Wang, et al. · Scientific Reports · 1
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Nasopharyngeal Carcinoma and Its Effect on Dry Eye Disease: A Nationwide Cohort Study
2022 · Ching-Tai Chen, Shun-Fa Yang, et al. · International Journal of Environmental Research and Public Health · 1
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Works count: 32
Citation count: 277
H-index: 8
I10-index: 8
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