Get started
Author

Kristoffer Sahlin

Observed name: Sahlin, Kristoffer
Observed institutions: Pennsylvania State University, Stockholm University, Science for Life Laboratory, Swedish e-Science Research Centre, Umeå Plant Science Centre, KTH Royal Institute of Technology, Umeå University
ORCID: 0000-0001-7378-2320
Observed ORCID: 0000-0001-7378-2320
OpenAlex ID: A5082939519
The Norway spruce genome sequence and conifer genome evolution
2013 · Björn Nystedt, Nathaniel R. Street, et al. · Nature · 1,508
PDF
Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis
2021 · Kristoffer Sahlin, Botond Sipos, et al. · Nature Communications · 189
PDF
BESST - Efficient scaffolding of large fragmented assemblies
2014 · Kristoffer Sahlin, Francesco Vezzi, et al. · BMC Bioinformatics · 164
PDF
NGSpeciesID: DNA barcode and amplicon consensus generation from long‐read sequencing data
2021 · Kristoffer Sahlin, Marisa C. W. Lim, et al. · Ecology and Evolution · 121
Strobealign: flexible seed size enables ultra-fast and accurate read alignment
2022 · Kristoffer Sahlin · Genome biology · 107
PDF
De Novo Clustering of Long-Read Transcriptome Data Using a Greedy, Quality Value-Based Algorithm
2020 · Kristoffer Sahlin, Paul Medvedev · Journal of Computational Biology · 95
PDF
Effective sequence similarity detection with strobemers
2021 · Kristoffer Sahlin · Genome Research · 88
PDF
A survey of mapping algorithms in the long-reads era
2023 · Kristoffer Sahlin, Thomas Baudeau, et al. · Genome biology · 68
PDF
Rapid in situ identification of biological specimens via DNA amplicon sequencing using miniaturized laboratory equipment
2022 · Aaron Pomerantz, Kristoffer Sahlin, et al. · Nature Protocols · 62
PDF
Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon
2018 · Kristoffer Sahlin, Marta Tomaszkiewicz, et al. · Nature Communications · 55
PDF
Accurate spliced alignment of long RNA sequencing reads
2021 · Kristoffer Sahlin, Veli Mäkinen · Bioinformatics · 49
PDF
Assembly scaffolding with PE-contaminated mate-pair libraries
2016 · Kristoffer Sahlin, Rayan Chikhi, et al. · Bioinformatics · 44
PDF
Estimating convergence of Markov chain Monte Carlo simulations
2011 · Kristoffer Sahlin · 27
DiscoverY: a classifier for identifying Y chromosome sequences in male assemblies
2019 · Samarth Rangavittal, Natasha Stopa, et al. · BMC Genomics · 24
PDF
De Novo Clustering of Long-Read Transcriptome Data Using a Greedy, Quality-Value Based Algorithm
2019 · Kristoffer Sahlin, Paul Medvedev · Lecture notes in computer science · 22
Improved gap size estimation for scaffolding algorithms
2012 · Kristoffer Sahlin, Nathaniel Street, et al. · Bioinformatics · 22
isONform: reference-free transcriptome reconstruction from Oxford Nanopore data
2023 · Alexander J Petri, Kristoffer Sahlin · Bioinformatics · 20
PDF
Efficient mapping of accurate long reads in minimizer space with mapquik
2023 · Bariş Ekim, Kristoffer Sahlin, et al. · Genome Research · 17
PDF
Gap Filling as Exact Path Length Problem
2016 · Leena Salmela, Kristoffer Sahlin, et al. · Journal of Computational Biology · 17
Nanopore sequencing of PCR products enables multicopy gene family reconstruction
2023 · Alice Namias, Kristoffer Sahlin, et al. · Computational and Structural Biotechnology Journal · 10
PDF
Author Correction: Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis
2021 · Kristoffer Sahlin, Paul Medvedev · Nature Communications · 10
PDF
Transcript Isoform Diversity of Ampliconic Genes on the Y Chromosome of Great Apes
2023 · Marta Tomaszkiewicz, Kristoffer Sahlin, et al. · Genome Biology and Evolution · 9
PDF
Strobemers: an alternative to k-mers for sequence comparison
2021 · Kristoffer Sahlin · bioRxiv (Cold Spring Harbor Laboratory) · 9
PDF
Flexible seed size enables ultra-fast and accurate read alignment
2021 · Kristoffer Sahlin · bioRxiv (Cold Spring Harbor Laboratory) · 8
PDF
Entropy predicts sensitivity of pseudorandom seeds
2023 · Benjamin Dominik Maier, Kristoffer Sahlin · Genome Research · 7
PDF
Works count: 64
Citation count: 2,806
H-index: 17
I10-index: 21
Year
Topic
Type