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Rory Donovan-Maiye

Observed names: Donovan-Maiye, Rory, Donovan-Maiye, Rory M., Rory M. Donovan-Maiye, Rory Donovan, Rory M. Donovan, Rory M. Donovan-Maiye
Observed institutions: University of Pittsburgh, Novo Nordisk (Denmark), Institute for Systems Biology, Allen Institute for Artificial Intelligence, Allen Institute for Cell Science, Carnegie Mellon University
ORCID: 0000-0001-8080-9771
Observed ORCID: 0000-0001-8080-9771
OpenAlex ID: A5083377509
Integrated intracellular organization and its variations in human iPS cells
2023 · Matheus P. Viana, Jianxu Chen, et al. · Nature · 131
Learning mixed graphical models with separate sparsity parameters and stability-based model selection
2016 · Andrew J. Sedgewick, Ivy Shi, et al. · BMC Bioinformatics · 88
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A comprehensive analysis of gene expression changes in a high replicate and open-source dataset of differentiating hiPSC-derived cardiomyocytes
2021 · Tanya Grancharova, Kaytlyn A. Gerbin, et al. · Scientific Reports · 61
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Cell states beyond transcriptomics: Integrating structural organization and gene expression in hiPSC-derived cardiomyocytes
2021 · Kaytlyn A. Gerbin, Tanya Grancharova, et al. · Cell Systems · 59
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Efficient stochastic simulation of chemical kinetics networks using a weighted ensemble of trajectories
2013 · Rory M. Donovan, Andrew J. Sedgewick, et al. · The Journal of Chemical Physics · 50
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A deep generative model of 3D single-cell organization
2022 · Rory M. Donovan-Maiye, Jackson M. Brown, et al. · PLoS Computational Biology · 43
Unbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of Trajectories
2016 · Rory M. Donovan, Jose-Juan Tapia, et al. · PLoS Computational Biology · 38
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Building a 3D Integrated Cell
2017 · Gregory R. Johnson, Rory M. Donovan-Maiye, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 36
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Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types
2020 · Cory C. Funk, Alex M. Casella, et al. · Cell Reports · 35
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Robust integrated intracellular organization of the human iPS cell: where, how much, and how variable
2020 · Matheus P. Viana, Jianxu Chen, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 26
Generative Modeling with Conditional Autoencoders: Building an Integrated Cell
2017 · Johnson, Gregory R., Donovan-Maiye, Rory M., et al. · arXiv (Cornell University) · 24
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Biophysical comparison of ATP synthesis mechanisms shows a kinetic advantage for the rotary process
2016 · Ramu Anandakrishnan, Zining Zhang, et al. · Proceedings of the National Academy of Sciences · 22
BDQC: a general-purpose analytics tool for domain-blind validation of Big Data
2018 · Eric W. Deutsch, Roger Kramer, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 7
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Studying Stem Cell Organization using “Label-Free” Methods and a Novel Generative Adversarial Model
2018 · Gregory Johnson, Rory Donovan-Maiye, et al. · Biophysical Journal · 3
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Systematic Testing of Belief-Propagation Estimates for Absolute Free Energies in Atomistic Peptides and Proteins
2017 · Rory M. Donovan-Maiye, Christopher J. Langmead, et al. · Journal of Chemical Theory and Computation · 3
SynthPert: Enhancing LLM Biological Reasoning via Synthetic Reasoning Traces for Cellular Perturbation Prediction
2025 · Phillips, Lawrence, Martell, Marc Boubnovski, et al. · arXiv (Cornell University) · 1
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CellRep: Multichannel Image Representation Learning Model
2025 · Lawrence Phillips, Rory Donovan-Maiye · IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW) · 1
Biophysical Comparison of ATP Synthesis Mechanisms Shows a Kinetic Advantage for the Rotary Process
2017 · Ramu Anandakrishnan, Zining Zhang, et al. · Biophysical Journal · 1
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Designing Protein Structures from Natural Language
2026 · Lee, Joseph, Li, Yanjing, et al. · arXiv (Cornell University)
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Enabling federated discovery leveraging agentic AI systems: The Cancer AI Alliance and DataVoyager.
2026 · Simone E. Dekker, Stephen Salerno, et al. · Journal of Clinical Oncology
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Query, Don't Train: Privacy-Preserving Tabular Prediction from EHR Data via SQL Queries
2025 · Stoisser, Josefa Lia, Martell, Marc Boubnovski, et al. · arXiv (Cornell University)
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Improved Method of Estimating the Instrumental Llod and Lloq Based on the Signal to Noise Ratio
2025 · Stephen Francis Donovan, Rory M. Donovan-Maiye · SSRN Electronic Journal
O3‐03‐01: Mechanistic and Directional Transcriptional Regulatory Networks in Alzheimer's Disease
2018 · Cory C. Funk, Matthew A. Richards, et al. · Alzheimer s & Dementia
Efficient sampling in stochastic biological models
2016 · Rory M. Donovan-Maiye · D-Scholarship@Pitt (University of Pittsburgh)
ATP Synthase: Advantages of the Rotary Mechanism under Diverse Conditions
2016 · Zining Zhang, Ramu Anandakrishnan, et al. · Biophysical Journal
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Works count: 27
Citation count: 629
H-index: 12
I10-index: 12
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