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Amir Pandi

Observed name: Pandi, Amir
Observed institutions: Université de Technologie de Compiègne, Centre National de la Recherche Scientifique, Inserm, Université Paris Cité, AgroParisTech, University of Tehran, Université Paris-Saclay, Microbiologie de l’alimentation au service de la santé, Sorbonne Université, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Biologie Computationnelle, Quantitative et Synthétique, Learning Planet Institute, Institut de Biologie Paris-Seine, Max Planck Institute for Terrestrial Microbiology, Evolution et ingénierie de systèmes dynamiques, Biofonderie de l'Alliance Sorbonne Université
ORCID: 0000-0002-5204-756X
Observed ORCID: 0000-0002-5204-756X
OpenAlex ID: A5084508175
Cell-free biosynthesis combined with deep learning accelerates de novo-development of antimicrobial peptides
2023 · Amir Pandi, David Adam, et al. · Nature Communications · 171
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Plug-and-play metabolic transducers expand the chemical detection space of cell-free biosensors
2019 · Peter L. Voyvodic, Amir Pandi, et al. · Nature Communications · 146
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A versatile active learning workflow for optimization of genetic and metabolic networks
2022 · Amir Pandi, Christoph Diehl, et al. · Nature Communications · 141
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Large scale active-learning-guided exploration for in vitro protein production optimization
2020 · Olivier Borkowski, Mathilde Koch, et al. · Nature Communications · 135
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Custom-made transcriptional biosensors for metabolic engineering
2019 · Mathilde Koch, Amir Pandi, et al. · Current Opinion in Biotechnology · 82
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Metabolic perceptrons for neural computing in biological systems
2019 · Amir Pandi, Mathilde Koch, et al. · Nature Communications · 77
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CodonTransformer: a multispecies codon optimizer using context-aware neural networks
2025 · Adibvafa Fallahpour, Vincent Gureghian, et al. · Nature Communications · 66
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CRISPR interference and its applications
2021 · Seyedkhashayar Ghavami, Amir Pandi · Progress in molecular biology and translational science · 52
Optimizing Cell-Free Biosensors to Monitor Enzymatic Production
2019 · Amir Pandi, Ioana Grigoras, et al. · ACS Synthetic Biology · 48
Harnessing the central dogma for stringent multi-level control of gene expression
2021 · F. Veronica Greco, Amir Pandi, et al. · Nature Communications · 46
A dataset of small molecules triggering transcriptional and translational cellular responses
2018 · Mathilde Koch, Amir Pandi, et al. · Data in Brief · 34
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Biosensor-based enzyme engineering approach applied to psicose biosynthesis
2019 · Jeremy Armetta, Rose Berthome, et al. · Synthetic Biology · 30
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Phage-mediated intercellular CRISPRi for biocomputation in bacterial consortia
2024 · Abhinav Pujar, Amit Pathania, et al. · Nucleic Acids Research · 12
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A synthetic communication system uncovers extracellular immunity that self-limits bacteriophage transmission
2022 · Amit Pathania, Corbin Hopper, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 8
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qByte: An open-source isothermal fluorimeter for democratizing analysis of nucleic acids, proteins and cells
2025 · Francisco J. Quero, Guy Aidelberg, et al. · PLoS Biology · 5
Synthetic minimal cells and their applications
2022 · Ali Yazdizadeh Kharrazi, Amir Zare, et al. · Elsevier eBooks · 4
Can scientific journals be classified based on their ‘citation profiles’?
2013 · Sayed-Amir Marashi, Amir Pandi, et al. · South African Journal of Science · 4
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A hybrid model for multiscale prediction and generation of phase separating protein regions
2025 · Amir M. MohammadHosseini, Hossein Teimouri, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 3
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Advances and applications of cell-free systems for metabolic production
2021 · Charles Moritz, Srividhya Sundaram, et al. · Elsevier eBooks · 3
Synthetic Biology at the Hand of Cell-Free Systems
2020 · Amir Pandi, Olivier Borkowski, et al. · Springer eBooks · 3
Harnessing the central dogma for stringent multi-level control of gene expression
2020 · F. Veronica Greco, Amir Pandi, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2
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Current Progress in Synthetic Genetic Networks
2020 · Amir Pandi, Heykel Trabelsi · Springer eBooks · 2
Microbial biosensors for discovery and engineering of enzymes and metabolism
2021 · Lennart Schada von Borzyskowski, Matthieu Da Costa, et al. · Elsevier eBooks · 1
Serotype-independent inhibition of S. pneumoniae by SMiTE, a commensal-derived bacteriocin
2026 · João Lança, Joana Bryton, et al. · mBio
Synthetic Multi-cellular Circuits in Bacteria Using Engineered Phages for Cell-to-Cell Communication
2023 · Kushwaha, Manish, Pujar, Abhinav, et al. · HAL (Le Centre pour la Communication Scientifique Directe)
Works count: 40
Citation count: 1,076
H-index: 12
I10-index: 13
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