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Author

Thomas Duigou

RetroPath2.0: A retrosynthesis workflow for metabolic engineers
2017 · Baudoin Delépine, Thomas Duigou, et al. · Metabolic Engineering · 247
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Reinforcement Learning for Bioretrosynthesis
2019 · Mathilde Koch, Thomas Duigou, et al. · ACS Synthetic Biology · 146
RetroRules: a database of reaction rules for engineering biology
2018 · Thomas Duigou, Melchior du Lac, et al. · Nucleic Acids Research · 119
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Artificial Intelligence Methods and Models for Retro-Biosynthesis: A Scoping Review
2024 · Guillaume Gricourt, Philippe Meyer, et al. · ACS Synthetic Biology · 60
The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering
2022 · Joan Hérisson, Thomas Duigou, et al. · Nature Communications · 46
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Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0
2017 · Mathilde Koch, Thomas Duigou, et al. · Journal of Cheminformatics · 19
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neo4jsbml: import systems biology markup language data into the graph database Neo4j
2024 · Guillaume Gricourt, Thomas Duigou, et al. · PeerJ · 11
PeroxiHUB: A Modular Cell-Free Biosensing Platform Using H 2 O 2 as Signal Integrator
2022 · Paul Soudier, Ana Zúñiga, et al. · ACS Synthetic Biology · 11
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Enzyme Discovery: Enzyme Selection and Pathway Design
2018 · Pablo Carbonell, Mathilde Koch, et al. · Methods in enzymology on CD-ROM/Methods in enzymology · 6
Galaxy-SynBioCAD: Synthetic Biology Design Automation tools in Galaxy workflows
2020 · Melchior du Lac, Thomas Duigou, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 4
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Reverse engineering molecules from fingerprints through deterministic enumeration and generative models
2025 · Philippe Meyer, Thomas Duigou, et al. · Journal of Cheminformatics · 3
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RetroRules 2026: an expanded database combining biochemical and organic reaction templates for pathway discovery
2025 · Thomas Duigou, Philippe Meyer, et al. · Nucleic Acids Research · 1
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"An Agentic Retrobiosynthesis Framework with Learned Frontier Selection" paper: code
2026 · Meyer, Philippe, Gricourt, Guillaume, et al. · Zenodo (CERN European Organization for Nuclear Research)
"An Agentic Retrobiosynthesis Framework with Learned Frontier Selection" paper: data
2026 · Meyer, Philippe, Gricourt, Guillaume, et al. · Zenodo (CERN European Organization for Nuclear Research)
An Agentic Retrobiosynthesis Framework with Learned Frontier Selection
2026 · Meyer, Philippe, Gricourt, Guillaume, et al. · arXiv (Cornell University)
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Representing Chemical and Enzymatic Reactions in Fingerprint Space for Applicability Filtering and Classification
2026 · Philippe Meyer, Thomas Duigou, et al. · ChemRxiv
"Representing Chemical and Enzymatic Reactions in Fingerprint Space for Applicability Filtering and Classification" paper: code
2026 · Meyer, Philippe, Duigou, Thomas, et al. · Zenodo (CERN European Organization for Nuclear Research)
"Representing Chemical and Enzymatic Reactions in Fingerprint Space for Applicability Filtering and Classification" paper: data
2026 · Meyer, Philippe, Duigou, Thomas, et al. · Zenodo (CERN European Organization for Nuclear Research)
End-to-end mapping of membrane transport from chemical structure to microorganisms
2026 · Guillaume Gricourt, Thomas Duigou, et al. · bioRxiv (Cold Spring Harbor Laboratory)
Reconstructing molecular structures from fingerprints: deterministic and generative approaches for chemical space exploration
2026 · Meyer, Philippe, Duigou, Thomas, et al. · HAL
RetroRules v1 (2019): SQLite Database providing retrosynthesis rules
2026 · Duigou, Thomas, du Lac, Melchior, et al. · DIGITAL.CSIC (Spanish National Research Council (CSIC))
Supporting data for: End-to-end mapping of membrane transport from chemical structure to microorganisms
2026 · Gricourt, Guillaume, Duigou, Thomas, et al. · Recherche Data Gouv France
RetroRules 2026: multi‑dataset combining chemistry and biochemistry for reaction templates
2025 · Duigou, Thomas, Meyer, Philippe, et al. · HAL
Artificial Intelligence Methods and Models for Retro-Biosynthesis
2024 · Gricourt, Guillaume, Meyer, Philippe, et al. · HAL
Automated Bio-Production Pipeline
2024 · Hérisson, Joan, Duigou, Thomas, et al. · HAL
Works count: 51
Citation count: 673
H-index: 8
I10-index: 8
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