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Author

Mohamed Uduman

Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data
2015 · Namita T. Gupta, Jason A. Vander Heiden, et al. · Bioinformatics · 867
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An atlas of substrate specificities for the human serine/threonine kinome
2023 · Jared L. Johnson, Tomer M. Yaron, et al. · Nature · 766
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Personal neoantigen vaccines induce persistent memory T cell responses and epitope spreading in patients with melanoma
2021 · Zhuting Hu, Donna E. Leet, et al. · Nature Medicine · 572
pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires
2014 · Jason A. Vander Heiden, Gur Yaari, et al. · Bioinformatics · 474
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Models of Somatic Hypermutation Targeting and Substitution Based on Synonymous Mutations from High-Throughput Immunoglobulin Sequencing Data
2013 · Gur Yaari, Jason A. Vander Heiden, et al. · Frontiers in Immunology · 234
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Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles
2015 · Daniel Gadala-Maria, Gur Yaari, et al. · Proceedings of the National Academy of Sciences · 195
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Quantifying selection in high-throughput Immunoglobulin sequencing data sets
2012 · Gur Yaari, Mohamed Uduman, et al. · Nucleic Acids Research · 195
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Angiosarcoma patients treated with immune checkpoint inhibitors: a case series of seven patients from a single institution
2019 · Vaia Florou, Andrew E. Rosenberg, et al. · Journal for ImmunoTherapy of Cancer · 188
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High-resolution antibody dynamics of vaccine-induced immune responses
2014 · Uri Laserson, Francois Vigneault, et al. · Proceedings of the National Academy of Sciences · 174
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The intrinsic substrate specificity of the human tyrosine kinome
2024 · Tomer M. Yaron-Barir, Brian A. Joughin, et al. · Nature · 172
Mutation-Derived Neoantigens for Cancer Immunotherapy
2019 · John C. Castle, Mohamed Uduman, et al. · Frontiers in Immunology · 121
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Spatiotemporal segregation of human marginal zone and memory B cell populations in lymphoid tissue
2018 · Yuan Zhao, Mohamed Uduman, et al. · Nature Communications · 115
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Taking Advantage: High-Affinity B Cells in the Germinal Center Have Lower Death Rates, but Similar Rates of Division, Compared to Low-Affinity Cells
2009 · Shannon M Anderson, Ashraf Khalil, et al. · The Journal of Immunology · 99
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Detecting selection in immunoglobulin sequences
2011 · M. Uduman, G. Yaari, et al. · Nucleic Acids Research · 85
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Improved methods for detecting selection by mutation analysis of Ig V region sequences
2008 · Uri Hershberg, Mohamed Uduman, et al. · International Immunology · 84
Cell subset prediction for blood genomic studies
2011 · Christopher R Bolen, Mohamed Uduman, et al. · BMC Bioinformatics · 65
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Shared VH1-46 gene usage by pemphigus vulgaris autoantibodies indicates common humoral immune responses among patients
2014 · Michael Jeffrey Cho, Agnes S.Y. Lo, et al. · Nature Communications · 61
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A hotspot mutation in transcription factor IKZF3 drives B cell neoplasia via transcriptional dysregulation
2021 · Gregory Lazarian, Shanye Yin, et al. · Cancer Cell · 56
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Influence of seasonal exposure to grass pollen on local and peripheral blood IgE repertoires in patients with allergic rhinitis
2014 · Yu-Chang B. Wu, Louisa K. James, et al. · Journal of Allergy and Clinical Immunology · 53
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Integrating B Cell Lineage Information into Statistical Tests for Detecting Selection in Ig Sequences
2013 · Mohamed Uduman, Mark J Shlomchik, et al. · The Journal of Immunology · 34
Characterization of Diabetogenic CD8+ T Cells
2016 · Justin W. Garyu, Mohamed Uduman, et al. · Journal of Biological Chemistry · 33
In Vivo Modeling of CLL Transformation to Richter Syndrome Reveals Convergent Evolutionary Paths and Therapeutic Vulnerabilities
2022 · Elisa ten Hacken, Tomasz Sewastianik, et al. · Blood Cancer Discovery · 32
Phase II study of pembrolizumab in refractory esophageal cancer with correlates of response and survival
2021 · Leonie K de Klerk, Anuj K Patel, et al. · Journal for ImmunoTherapy of Cancer · 31
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Gene Expression Gradients along the Tonotopic Axis of the Chicken Auditory Epithelium
2011 · Corey S. Frucht, Mohamed Uduman, et al. · Journal of the Association for Research in Otolaryngology · 24
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Activation of Notch and Myc Signaling via B-cell–Restricted Depletion of Dnmt3a Generates a Consistent Murine Model of Chronic Lymphocytic Leukemia
2021 · Anat Biran, Shanye Yin, et al. · Cancer Research · 21
Works count: 61
Citation count: 4,863
H-index: 24
I10-index: 30
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