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Zhen Shen

The Nuclear-Retained Noncoding RNA MALAT1 Regulates Alternative Splicing by Modulating SR Splicing Factor Phosphorylation
2010 · Vidisha Tripathi, Jonathan D. Ellis, et al. · Molecular Cell · 2,291
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Long Noncoding RNA MALAT1 Controls Cell Cycle Progression by Regulating the Expression of Oncogenic Transcription Factor B-MYB
2013 · Vidisha Tripathi, Zhen Shen, et al. · PLoS Genetics · 763
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Recurrent Neural Network for Predicting Transcription Factor Binding Sites
2018 · Zhen Shen, Wenzheng Bao, et al. · Scientific Reports · 216
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Human origin recognition complex is essential for HP1 binding to chromatin and heterochromatin organization
2010 · Supriya G. Prasanth, Zhen Shen, et al. · Proceedings of the National Academy of Sciences · 158
A WD-Repeat Protein Stabilizes ORC Binding to Chromatin
2010 · Zhen Shen, Kizhakke M. Sathyan, et al. · Molecular Cell · 155
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A survey on deep learning in DNA/RNA motif mining
2020 · Ying He, Zhen Shen, et al. · Briefings in Bioinformatics · 108
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miRNA-Disease Association Prediction with Collaborative Matrix Factorization
2017 · Zhen Shen, You-Hua Zhang, et al. · Complexity · 92
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Newly-developed three-band hyperspectral vegetation index for estimating leaf relative chlorophyll content of mangrove under different severities of pest and disease
2022 · Xiapeng Jiang, Jianing Zhen, et al. · Ecological Indicators · 76
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Modeling in-vivo protein-DNA binding by combining multiple-instance learning with a hybrid deep neural network
2019 · Qinhu Zhang, Zhen Shen, et al. · Scientific Reports · 72
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scMGATGRN: a multiview graph attention network–based method for inferring gene regulatory networks from single-cell transcriptomic data
2024 · Lin Yuan, Ling Zhao, et al. · Briefings in Bioinformatics · 71
Predicting in-vitro Transcription Factor Binding Sites Using DNA Sequence + Shape
2019 · Qinhu Zhang, Zhen Shen, et al. · IEEE Transactions on Computational Biology and Bioinformatics · 69
A BEN-domain-containing protein associates with heterochromatin and represses transcription
2011 · Kizhakke M. Sathyan, Zhen Shen, et al. · Journal of Cell Science · 67
Predicting transcription factor binding sites using DNA shape features based on shared hybrid deep learning architecture
2021 · Siguo Wang, Qinhu Zhang, et al. · Molecular Therapy — Nucleic Acids · 62
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Performance of XGBoost Ensemble Learning Algorithm for Mangrove Species Classification with Multisource Spaceborne Remote Sensing Data
2024 · Jianing Zhen, Dehua Mao, et al. · Journal of Remote Sensing · 60
Mapping mangrove leaf area index ( LAI ) by combining remote sensing images with PROSAIL‐D and XGBoost methods
2022 · Demei Zhao, Jianing Zhen, et al. · Remote Sensing in Ecology and Conservation · 58
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Dynamic Association of ORCA with Prereplicative Complex Components Regulates DNA Replication Initiation
2012 · Zhen Shen, Arindam Chakraborty, et al. · Molecular and Cellular Biology · 55
The preRC protein ORCA organizes heterochromatin by assembling histone H3 lysine 9 methyltransferases on chromatin
2015 · Sumanprava Giri, Vasudha Aggarwal, et al. · eLife · 54
A machine learning framework that integrates multi-omics data predicts cancer-related LncRNAs
2021 · Lin Yuan, Jing Zhao, et al. · BMC Bioinformatics · 51
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A Deep Learning Model for RNA-Protein Binding Preference Prediction Based on Hierarchical LSTM and Attention Network
2020 · Zhen Shen, Qinhu Zhang, et al. · IEEE Transactions on Computational Biology and Bioinformatics · 51
RNA-Protein Binding Sites Prediction via Multi Scale Convolutional Gated Recurrent Unit Networks
2019 · Zhen Shen, Su-Ping Deng, et al. · IEEE Transactions on Computational Biology and Bioinformatics · 48
Polypurine-repeat-containing RNAs: a novel class of long non-coding RNA in mammalian cells
2010 · Ruiping Zheng, Zhen Shen, et al. · Journal of Cell Science · 45
iCircDA-NEAE: Accelerated attribute network embedding and dynamic convolutional autoencoder for circRNA-disease associations prediction
2023 · Lin Yuan, Jiawang Zhao, et al. · PLoS Computational Biology · 44
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Identification of ferroptosis-related lncRNAs for predicting prognosis and immunotherapy response in non-small cell lung cancer
2024 · Lin Yuan, Shengguo Sun, et al. · Future Generation Computer Systems · 39
The Diffusion Coefficient for PGK Folding in Eukaryotic Cells
2010 · Apratim Dhar, Simon Ebbinghaus, et al. · Biophysical Journal · 37
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Prediction of Back-splicing sites for CircRNA formation based on convolutional neural networks
2022 · Zhen Shen, Yan Ling Shao, et al. · BMC Genomics · 36
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Works count: 74
Citation count: 5,274
H-index: 30
I10-index: 46
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